Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_E14
         (506 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73426-1|CAA97792.1|  155|Caenorhabditis elegans Hypothetical pr...   133   6e-32
U97008-2|AAB52309.1|  336|Caenorhabditis elegans Serpentine rece...    29   1.5  

>Z73426-1|CAA97792.1|  155|Caenorhabditis elegans Hypothetical
           protein F40F11.1 protein.
          Length = 155

 Score =  133 bits (322), Expect = 6e-32
 Identities = 62/109 (56%), Positives = 77/109 (70%), Gaps = 3/109 (2%)
 Frame = +1

Query: 46  KRFRNRPPLFLNRKGGMX---RKDMRHHKNVGLGFKTPREAIEGTYIDKKCPFTGNVSIR 216
           + F  +P + LN K  +    +K  R+ + VGLGFK PR+A+EGTYIDKKCP+ GNV IR
Sbjct: 7   RAFLKQPTVNLNNKARILAGSKKTPRYIREVGLGFKAPRDAVEGTYIDKKCPWAGNVPIR 66

Query: 217 GRILTGVVQKMKMXXTIVIRRDYLHYLPKYNXFXKRHRNMSVHLSPCFR 363
           G ILTGVV K KM  TIV+RRDYLHY+ KY  + KRH+N+  H SP FR
Sbjct: 67  GMILTGVVLKNKMTRTIVVRRDYLHYIKKYRRYEKRHKNVPAHCSPAFR 115



 Score = 50.0 bits (114), Expect = 1e-06
 Identities = 23/34 (67%), Positives = 25/34 (73%)
 Frame = +2

Query: 338 PCICRLASGHVEIGDIVTIGECRPLSKTVRFNVL 439
           P  C  A   +  GD+VTIGECRPLSKTVRFNVL
Sbjct: 107 PAHCSPAFRDIHPGDLVTIGECRPLSKTVRFNVL 140


>U97008-2|AAB52309.1|  336|Caenorhabditis elegans Serpentine
           receptor, class h protein244 protein.
          Length = 336

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 16/50 (32%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
 Frame = -1

Query: 146 VLKPKPTFLW*RMSFLFMPPFLF---RKSGGLFLKRFLCXIRHFALTNEK 6
           V KP   F++  + F+F+PPFL    +++   F+   L  + HF+L +E+
Sbjct: 135 VRKPYLIFVYISVPFIFLPPFLIIPEQENARSFILDKLPCLPHFSLNDEE 184


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,554,234
Number of Sequences: 27780
Number of extensions: 192975
Number of successful extensions: 464
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 458
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 464
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 977860456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)