Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_E13
         (549 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr ...    27   2.4  
SPAC23C4.14 |alg1||mannosyltransferase complex subunit Alg1 |Sch...    26   3.2  
SPCC16A11.06c |gpi10||pig-B|Schizosaccharomyces pombe|chr 3|||Ma...    26   4.2  
SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr...    25   5.6  
SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomy...    25   5.6  
SPCC737.06c |||glutamate-cysteine ligase regulatory subunit |Sch...    25   7.3  
SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc...    25   9.7  
SPCC1672.06c |asp1|vip1|inositol hexakisphosphate kinase/inosito...    25   9.7  

>SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 977

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 15/52 (28%), Positives = 24/52 (46%)
 Frame = +1

Query: 373 FLLYKREFGSSIXKAFYXDMTIPELIXRLLLKRAVSFMGELHSYLLLSGESG 528
           FLL +  F  +I K+FY  +  P LI   ++      +  +     L G+SG
Sbjct: 147 FLLTRDPFEKTIAKSFYISLVYPSLIAAGVVSLVTILVPPMRMASDLVGQSG 198


>SPAC23C4.14 |alg1||mannosyltransferase complex subunit Alg1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 424

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = +1

Query: 70  IRMELSNLFHSLPWYKPDWCYPSMSKENYELLKQCNDL 183
           ++ E S      P +K  +C P +S E+Y  +  C DL
Sbjct: 288 MKEEFSQYIKKHPLHKVRFCMPWLSIEDYPQVMACADL 325


>SPCC16A11.06c |gpi10||pig-B|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 506

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = -3

Query: 199 RIQFWANHCIVLTVR-NSLYSYLGSTSLVYTMVKSETNLRAP 77
           +I+ W ++ I    R  SLYSYL S  L Y  V+   N   P
Sbjct: 450 KIKEWPDYLIFFEERFYSLYSYLDSRGLKYEEVQRYYNSLIP 491


>SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 749

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = -2

Query: 527 PDSPLSNK*LCNSPMNETALFSNNLXMSSGIVMS 426
           PD  +S     + P + ++L SNN  M+S +++S
Sbjct: 83  PDKAISQYYETSPPSSTSSLSSNNQLMNSSVILS 116


>SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 800

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -3

Query: 184 ANHCIVLTVRNSLYSYLGSTSLVYTMVKSETNLRAPS 74
           A HC++++ R  L   + S S+ +T+    T L A S
Sbjct: 605 AEHCVIISQRRLLVWNVISASVQWTLASKFTGLLASS 641


>SPCC737.06c |||glutamate-cysteine ligase regulatory subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 287

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +1

Query: 136 SMSKENYELLKQCNDLPKTEFSXDIEDIINRSKNFSIPFPI 258
           S  K N EL+K   ++  T+F+ D ++  N  KN  +  P+
Sbjct: 28  SRIKSNLELVKALENVKLTKFTGDGDE--NLKKNIKVLVPV 66


>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1238

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +1

Query: 181 LPKTEFSXDIEDIINRSKNFSIPFPIES 264
           +PK +FS D  ++I+ + + S+P P  S
Sbjct: 682 VPKKQFSVDQNNVISDNTDCSLPKPSNS 709


>SPCC1672.06c |asp1|vip1|inositol hexakisphosphate kinase/inositol
           pyrophosphate synthase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 920

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -3

Query: 217 YLQCHXRIQFWANHCIVLTVRNSLYSYL 134
           Y QC   +   A HCI ++ R SL  +L
Sbjct: 865 YAQCPLDMNLDAKHCISVSPRRSLTRHL 892


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,137,842
Number of Sequences: 5004
Number of extensions: 41381
Number of successful extensions: 106
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)