Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_E13
         (549 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    25   0.67 
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          24   0.88 
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      24   0.88 
AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.          24   0.88 
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    21   6.2  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    21   6.2  

>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 24.6 bits (51), Expect = 0.67
 Identities = 13/55 (23%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
 Frame = +1

Query: 79  ELSNLFHSLPWYKPDWCY--PSMSKENYELLKQCNDLPKTEFSXDIEDIINRSKN 237
           ++ +L H+  W +PDW +      K   +LL+  + L K       E+  +  +N
Sbjct: 218 DILHLRHTKIWLRPDWLFNLTKYGKNQIKLLEIIHGLTKKVIQLKKEEYKSGKRN 272


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 24.2 bits (50), Expect = 0.88
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +3

Query: 315 KYLRNLPNYTREDLD 359
           KY  NLP YT E+L+
Sbjct: 430 KYKENLPKYTTEELN 444


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 24.2 bits (50), Expect = 0.88
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +3

Query: 315 KYLRNLPNYTREDLD 359
           KY  NLP YT E+L+
Sbjct: 430 KYKENLPKYTTEELN 444


>AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.
          Length = 226

 Score = 24.2 bits (50), Expect = 0.88
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +3

Query: 315 KYLRNLPNYTREDLD 359
           KY  NLP YT E+L+
Sbjct: 56  KYKENLPKYTTEELN 70


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 9/36 (25%), Positives = 18/36 (50%)
 Frame = -1

Query: 222 NDIFNVX*EFSFGQIIALF*QFVILFTHTWVAPVWF 115
           +D+  V  +    Q+I +  +  I+ T+ WV   W+
Sbjct: 51  SDVLRVCIKLKLSQLIDVNLKNQIMTTNLWVEQSWY 86


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 9/36 (25%), Positives = 18/36 (50%)
 Frame = -1

Query: 222 NDIFNVX*EFSFGQIIALF*QFVILFTHTWVAPVWF 115
           +D+  V  +    Q+I +  +  I+ T+ WV   W+
Sbjct: 51  SDVLRVCIKLKLSQLIDVNLKNQIMTTNLWVEQSWY 86


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 139,399
Number of Sequences: 438
Number of extensions: 2809
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15704448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)