Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP03_F_E12
(653 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid alpha... 92 7e-20
SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase Abc4|... 29 0.59
SPCC757.13 |||membrane transporter |Schizosaccharomyces pombe|ch... 28 1.0
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 26 4.1
SPBC25D12.05 |trm1||N2,N2-dimethylguanosine tRNA methyltransfera... 26 4.1
SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharo... 26 5.5
SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr 1||... 25 7.2
SPAC869.05c |||sulfate transporter |Schizosaccharomyces pombe|ch... 25 7.2
SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual 25 9.5
>SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid
alpha-glucosyltransferase Alg10|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 445
Score = 91.9 bits (218), Expect = 7e-20
Identities = 49/119 (41%), Positives = 68/119 (57%), Gaps = 1/119 (0%)
Frame = +2
Query: 242 HHTTRTVIDELFHIPQGLSYCRRNFVHWDPKITTLPGLYLVSAAFLGTYFPCTTYNLRFI 421
++ +DE+FHI Q +CR+++ WDP ITT PGLYLVS A L + C+ +LR I
Sbjct: 25 YYVPNPYLDEIFHIAQAQRFCRKDW-DWDPAITTPPGLYLVSVA-LSPFIGCSNVSLRLI 82
Query: 422 NLLASCVNL-LLFASILKFVYTSKQSKIVIQALNLTLLPPLYFFSHVYYTDTLSLTFLL 595
N L + L L I+ + K + A L+ LPPL+FFS +YYTD S F+L
Sbjct: 83 NWLVGVIGLPWLINDIVSLLNNRKGDVVTYFAYTLSSLPPLWFFSFLYYTDIGSTFFVL 141
>SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase
Abc4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1469
Score = 29.1 bits (62), Expect = 0.59
Identities = 20/52 (38%), Positives = 31/52 (59%), Gaps = 3/52 (5%)
Frame = +2
Query: 419 INLLASCVNLLLFASILKFVYTSKQSKIVIQA--LNLTLLPPLY-FFSHVYY 565
I LLA V+L L S L+ +Y + + A LNL LLPP++ F+S+ ++
Sbjct: 129 ICLLAYSVHLFLLHS-LRMIYPRARPTLYHAAVLLNLLLLPPIFHFYSYPFF 179
>SPCC757.13 |||membrane transporter |Schizosaccharomyces pombe|chr
3|||Manual
Length = 522
Score = 28.3 bits (60), Expect = 1.0
Identities = 10/39 (25%), Positives = 24/39 (61%)
Frame = +2
Query: 473 FVYTSKQSKIVIQALNLTLLPPLYFFSHVYYTDTLSLTF 589
F YT+K+++ V+ ++L ++P + + Y D +L++
Sbjct: 59 FTYTAKEARRVLWKIDLVMMPVMCITYMIQYLDKTALSY 97
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 26.2 bits (55), Expect = 4.1
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Frame = -3
Query: 504 TIFDCLLVYTNFNIEANNKRFTH--EASKLINL 412
T+ DCL FN++AN +FT + K +NL
Sbjct: 2571 TVEDCLRQLQKFNLDANKFQFTSLLDIKKWLNL 2603
>SPBC25D12.05 |trm1||N2,N2-dimethylguanosine tRNA
methyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 548
Score = 26.2 bits (55), Expect = 4.1
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = -2
Query: 190 SQHQIVRCRCTHFFQTNCS 134
SQ + +C TH F+ NCS
Sbjct: 93 SQENLTKCDTTHDFEKNCS 111
>SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1369
Score = 25.8 bits (54), Expect = 5.5
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +1
Query: 346 TWPIFSICSVLGNVFSLHNLQSKVYQLAGF 435
TWP+++I LG + S+ + Q + L+GF
Sbjct: 942 TWPLYTIFLSLGQILSISSFQLSL--LSGF 969
>SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr
1|||Manual
Length = 408
Score = 25.4 bits (53), Expect = 7.2
Identities = 17/46 (36%), Positives = 21/46 (45%)
Frame = +2
Query: 350 GLYLVSAAFLGTYFPCTTYNLRFINLLASCVNLLLFASILKFVYTS 487
GLYL L Y Y + +L C LL S+ +FVYTS
Sbjct: 51 GLYLYENG-LDPYSGGVFYQSPLLLILNYCCELLGGISVTRFVYTS 95
>SPAC869.05c |||sulfate transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 840
Score = 25.4 bits (53), Expect = 7.2
Identities = 17/72 (23%), Positives = 33/72 (45%)
Frame = +2
Query: 281 IPQGLSYCRRNFVHWDPKITTLPGLYLVSAAFLGTYFPCTTYNLRFINLLASCVNLLLFA 460
+PQG+SY K+ TLP Y + ++F+G C + +++ V L+ A
Sbjct: 136 VPQGMSYA---------KVATLPSEYGLYSSFVGVAIYCFFATSKDVSIGPVAVMSLITA 186
Query: 461 SILKFVYTSKQS 496
++ V ++
Sbjct: 187 KVIANVMAKDET 198
>SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 578
Score = 25.0 bits (52), Expect = 9.5
Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Frame = +1
Query: 427 AGFVREPL--IVCLYI-KICVYK*AIENRDSSTEFNVASTVVFLFTRILHRYIISDVSV 594
A F R L +VC+ K+ + K S + N+ T+ L TR++ Y++ D V
Sbjct: 131 AAFARNGLKKVVCISTAKVPIVKVWDSELQLSCDCNINKTISTLNTRLMRSYVLCDPRV 189
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,734,308
Number of Sequences: 5004
Number of extensions: 57392
Number of successful extensions: 138
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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