Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_E12
         (653 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0425 - 25121344-25121603,25121696-25121838,25122144-251223...    82   4e-16
11_06_0076 - 19830482-19831258,19837352-19837613,19838073-19838485     28   5.6  
06_02_0314 - 14190245-14191006                                         28   5.6  
04_04_1299 + 32450998-32451134,32451575-32452304,32452856-324530...    27   9.9  

>04_04_0425 -
           25121344-25121603,25121696-25121838,25122144-25122348,
           25122453-25122590,25122999-25123185,25123519-25123852,
           25123930-25124018,25124088-25124231,25124514-25124603
          Length = 529

 Score = 81.8 bits (193), Expect = 4e-16
 Identities = 48/132 (36%), Positives = 70/132 (53%), Gaps = 15/132 (11%)
 Frame = +2

Query: 266 DELFHIPQGLSYCRRNFVHWDPKITTLPGLYLVSAAFLGTYFP--------------CTT 403
           DE+FH+PQ   YCR +F+ WDP ITT PGLY +S A++ + FP              CTT
Sbjct: 79  DEIFHVPQVQRYCRGDFLIWDPMITTPPGLYYISLAYVASLFPGAWVTRIAEAFDALCTT 138

Query: 404 YNLRFINLLASCVNLLLFASILKFVYTS-KQSKIVIQALNLTLLPPLYFFSHVYYTDTLS 580
             LR  N++ + +  +L   +L  +     + K    A+ + L P  +FF+ +YYTD  S
Sbjct: 139 ALLRSTNVIMAMICGVLVHDLLLCIRPKIGKRKATAFAILVALYPIHWFFTFLYYTDVAS 198

Query: 581 LTFLLAFSRLCL 616
           L  +LA    CL
Sbjct: 199 LAAVLAMYLFCL 210


>11_06_0076 - 19830482-19831258,19837352-19837613,19838073-19838485
          Length = 483

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
 Frame = +1

Query: 307 SELRALG-SKNNYTTWPIFSICSVLGNVFSLHNLQSKVYQLAGFVREPLIVCLYIKI 474
           S LR  G SK N +   I    S+ G +F+    Q KV+  A  ++  ++    IKI
Sbjct: 193 SVLRCFGISKRNTSNSDILPELSIDGRIFTKEEAQKKVFSNAAMIQSQIVHKNIIKI 249


>06_02_0314 - 14190245-14191006
          Length = 253

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 13/47 (27%), Positives = 24/47 (51%)
 Frame = +2

Query: 335 ITTLPGLYLVSAAFLGTYFPCTTYNLRFINLLASCVNLLLFASILKF 475
           + T  GL+++            TY LRFI+   + ++L++F S+  F
Sbjct: 155 VATRAGLWVIDGTAPPPPDVAATYRLRFIDFFHAVLSLIVFLSVAMF 201


>04_04_1299 +
           32450998-32451134,32451575-32452304,32452856-32453053,
           32453398-32454065,32454555-32454978,32455917-32456009,
           32456101-32456295,32456378-32456470,32456718-32456930,
           32457015-32457104,32457239-32457400
          Length = 1000

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 8/25 (32%), Positives = 19/25 (76%)
 Frame = -3

Query: 483 VYTNFNIEANNKRFTHEASKLINLR 409
           VYTNFN+++N + +  E+ ++ +++
Sbjct: 68  VYTNFNVQSNAQEWLEESKRISSIK 92


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,297,916
Number of Sequences: 37544
Number of extensions: 317652
Number of successful extensions: 601
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 583
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 600
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)