Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_E09
         (653 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0995 - 29545058-29545204,29545988-29546074,29546166-295463...    93   2e-19
12_02_0683 + 22006770-22006935,22007030-22007274,22007524-220077...    28   7.5  
10_07_0091 - 12774590-12774664,12774971-12775134,12775249-127753...    27   9.9  
04_01_0597 + 7856610-7856936                                           27   9.9  
03_06_0343 + 33274329-33274981,33275197-33276121                       27   9.9  

>03_05_0995 -
           29545058-29545204,29545988-29546074,29546166-29546361,
           29546686-29546915
          Length = 219

 Score = 93.1 bits (221), Expect = 2e-19
 Identities = 56/175 (32%), Positives = 94/175 (53%)
 Frame = +1

Query: 121 FLEANAKEFDSVLKLYPQAIKLKAERKTKRPDELIKLDNWYQNELPKKIKSRGKDAHMIH 300
           F   +A E+ + L  Y +  +L A  K   PD L+++D++Y+ +LP  ++ R  +  +  
Sbjct: 7   FASGDAAEWRAALAAYDR--RLAALGK---PD-LVEVDSFYRRDLPDLLRRRDPEPFLAK 60

Query: 301 EELVQLMKWKQARGKFYPQLSYLIKVNTPRAVMQETKKAFRKLPNIESAMTALSNLKGVG 480
            ELV+L++WK +RGK+ P+L   +K      V   + KAF  LP++  A+T L+ LKGVG
Sbjct: 61  PELVRLLQWKLSRGKWRPRLMDFVKGLEDAVVESASCKAFAALPDLRKAITELTVLKGVG 120

Query: 481 XXXXXXXXXXXXPEIAPFMADECVQAIPEMEGSDYTAREYLNFVSHIRNVCDRLN 645
                       P++APFM+DE + A       +YT ++YL F   ++     L+
Sbjct: 121 PATASAVLAAYAPDVAPFMSDEAMVAALG-NAKEYTLKQYLAFAEKLQTKSKELS 174


>12_02_0683 +
           22006770-22006935,22007030-22007274,22007524-22007727,
           22007847-22007939,22008015-22008107,22008196-22008537,
           22008675-22008737,22008812-22008892
          Length = 428

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +3

Query: 408 EKGLPQTAQYRIRDDRSKQSQRRGNGHSISVISCR 512
           E+G+ +T + R+R  R  Q     N  +IS++ CR
Sbjct: 393 EEGVVRTNRKRVRCSRPDQDDSMSNQRNISMVFCR 427


>10_07_0091 - 12774590-12774664,12774971-12775134,12775249-12775382,
            12775463-12775556,12775650-12775758,12776055-12776103,
            12778336-12778376,12779539-12779571,12779665-12779754,
            12780474-12780507,12781218-12781510,12781859-12782057,
            12782129-12782289,12783130-12783282,12783545-12783715,
            12783822-12783921,12784023-12784111,12784192-12784290,
            12784406-12784676,12784764-12784961,12785041-12785140,
            12785799-12785931,12786016-12786277,12787106-12787155
          Length = 1033

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 23/71 (32%), Positives = 32/71 (45%)
 Frame = -3

Query: 414  LFRLLHHSSWRVHFYQIRQLRVEFSSGLFPFHELDKFFVDHVRIFTPRFDLLGKFILIPI 235
            LFR+  H  +  HF +I  L+ E          L+  F  H  +FT  F L+ K  L P+
Sbjct: 973  LFRVYAHI-YHTHFQKIVSLKEEA--------HLNTCF-KHFTLFTWEFKLIDKAELAPL 1022

Query: 234  VQFYELIWSFC 202
            +   E I S C
Sbjct: 1023 IDLIESIVSVC 1033


>04_01_0597 + 7856610-7856936
          Length = 108

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
 Frame = +3

Query: 384 ATSCDARDEKGL-PQTAQYRIRD--DRSKQSQRRGNGHSISVISCR*SRNSTVYG*RMRP 554
           A    AR +K L PQ  ++R  +  D  +Q++ RG+G      S R     +V     RP
Sbjct: 33  ALQASARKKKALEPQARRWRTAEGADEPQQAKARGSGRKAMASSKRGKGQRSVGADAQRP 92

Query: 555 GD 560
           G+
Sbjct: 93  GE 94


>03_06_0343 + 33274329-33274981,33275197-33276121
          Length = 525

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
 Frame = +3

Query: 318 HEMETGQRKILPAV--VVSDKSEHATSCDARDEKG 416
           HEM     ++LP V  V +D  EH T+ + RD+ G
Sbjct: 460 HEMFAAVERLLPEVDLVPADVGEHLTAKNPRDDAG 494


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,402,941
Number of Sequences: 37544
Number of extensions: 379658
Number of successful extensions: 862
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 842
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 862
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)