Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_E07
         (636 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    42   4e-06
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   4.3  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   4.3  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    22   5.7  
DQ435331-1|ABD92646.1|  135|Apis mellifera OBP14 protein.              22   5.7  
DQ435337-1|ABD92652.1|  135|Apis mellifera OBP20 protein.              21   7.6  
DQ435336-1|ABD92651.1|  135|Apis mellifera OBP19 protein.              21   7.6  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   7.6  

>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 42.3 bits (95), Expect = 4e-06
 Identities = 36/117 (30%), Positives = 58/117 (49%), Gaps = 1/117 (0%)
 Frame = +1

Query: 286 KVVLITGASSGIGEALAHVFYGQGCKIILASRRKRXLERVKXDLISXKVAIQTLEPVVLE 465
           +V L+TGA+SGIG+ L     G+G K+I  + +   ++++K  +   K     L P+  +
Sbjct: 8   EVALVTGANSGIGKCLIECLVGKGMKVIGIAPQ---VDKMKTLVEELKSKPGKLVPLQCD 64

Query: 466 L-NLXDIHNMYLFVXKVYGICGHVDILXNNGGVTHXGSILNTKTDVDXKIMFINYFG 633
           L N  DI  +  +V K  G    +DIL NN  +    ++ N +     KI  IN  G
Sbjct: 65  LSNQNDILKVIEWVEKNLGA---IDILINNATINIDVTLQNDEVLDWKKIFDINLLG 118


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 15/61 (24%), Positives = 26/61 (42%)
 Frame = +1

Query: 337  HVFYGQGCKIILASRRKRXLERVKXDLISXKVAIQTLEPVVLELNLXDIHNMYLFVXKVY 516
            HV+   GC I+  + + R +      L+S  V +Q    VV  L    ++ + +    V 
Sbjct: 1520 HVWPDNGCPILYFTIQYRPINEFHWTLVSNSVKMQR-RFVVTNLQPSSVYQLKVETHNVA 1578

Query: 517  G 519
            G
Sbjct: 1579 G 1579


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 15/61 (24%), Positives = 26/61 (42%)
 Frame = +1

Query: 337  HVFYGQGCKIILASRRKRXLERVKXDLISXKVAIQTLEPVVLELNLXDIHNMYLFVXKVY 516
            HV+   GC I+  + + R +      L+S  V +Q    VV  L    ++ + +    V 
Sbjct: 1516 HVWPDNGCPILYFTIQYRPINEFHWTLVSNSVKMQR-RFVVTNLQPSSVYQLKVETHNVA 1574

Query: 517  G 519
            G
Sbjct: 1575 G 1575


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = +1

Query: 196 YIGVPFVVGVTMYGV-INHLLQKKRRSTL 279
           Y G P  VGVTMY + I+ L + K   TL
Sbjct: 31  YGGPPVEVGVTMYVLSISSLSEVKMDFTL 59


>DQ435331-1|ABD92646.1|  135|Apis mellifera OBP14 protein.
          Length = 135

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 6/12 (50%), Positives = 10/12 (83%)
 Frame = -2

Query: 131 KTLYLLYYFCIC 96
           KT+ L++ FC+C
Sbjct: 2   KTIVLIFGFCVC 13


>DQ435337-1|ABD92652.1|  135|Apis mellifera OBP20 protein.
          Length = 135

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 6/12 (50%), Positives = 10/12 (83%)
 Frame = -2

Query: 131 KTLYLLYYFCIC 96
           KT+ +++ FCIC
Sbjct: 2   KTIVVIFAFCIC 13


>DQ435336-1|ABD92651.1|  135|Apis mellifera OBP19 protein.
          Length = 135

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 6/12 (50%), Positives = 10/12 (83%)
 Frame = -2

Query: 131 KTLYLLYYFCIC 96
           KT+ +++ FCIC
Sbjct: 2   KTIVVIFAFCIC 13


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = -1

Query: 396 EXSFPPRSKDN 364
           E  FPPRSK N
Sbjct: 425 ELGFPPRSKKN 435


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,807
Number of Sequences: 438
Number of extensions: 3819
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19071468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)