Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP03_F_E05
(621 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0582 - 4318837-4318967,4319219-4319399,4319504-4319701,431... 235 3e-62
07_03_1272 - 25360180-25360286,25360454-25360658,25360748-253609... 234 4e-62
01_06_0364 - 28749825-28750053,28750442-28750621,28751018-287511... 29 3.9
08_01_0152 - 1190358-1190462,1190648-1190765,1191134-1192691,119... 28 5.2
06_01_0497 + 3555919-3557154,3557815-3558143,3558177-3558775,355... 28 6.9
01_06_0575 - 30357556-30357582,30357698-30357944,30358039-303581... 28 6.9
05_03_0609 - 16161801-16162848,16163525-16163682,16163806-161638... 27 9.1
03_02_0792 + 11236785-11237337,11237711-11238261,11238446-112386... 27 9.1
>03_01_0582 -
4318837-4318967,4319219-4319399,4319504-4319701,
4319791-4320053,4320453-4320597
Length = 305
Score = 235 bits (574), Expect = 3e-62
Identities = 108/173 (62%), Positives = 133/173 (76%)
Frame = +1
Query: 103 LGQKMLTSRMETYVYKRRADGTHVINLRRTWEKLVLAARAVVAIENPADVFVISSRPFGQ 282
LG K +ME YVYKRR+DG ++INL +TWEKL LAAR +VAIENP D+ V S+RP+GQ
Sbjct: 29 LGTKNCDFQMERYVYKRRSDGIYIINLGKTWEKLQLAARVIVAIENPQDIIVQSARPYGQ 88
Query: 283 RAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQDHQPITEASYVNIPV 462
RAVLKFA +TGA IAGR TPG FTNQ+Q +F EPRLLI+ DP DHQPI E++ NIP
Sbjct: 89 RAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDPRTDHQPIKESALGNIPT 148
Query: 463 IALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRXQRWDV 621
IA C+TDSP+R+VDI IP N K +SIG ++WLLAR VL++RG + +WDV
Sbjct: 149 IAFCDTDSPMRYVDIGIPANNKGRNSIGCLFWLLARMVLQMRGTILPGHKWDV 201
Score = 28.7 bits (61), Expect = 3.9
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +3
Query: 51 LALNEEXVTKMLAATTHLGAENVNFQ 128
L+ E+ V MLAA HLG +N +FQ
Sbjct: 12 LSQAEQDVQMMLAADVHLGTKNCDFQ 37
>07_03_1272 -
25360180-25360286,25360454-25360658,25360748-25360945,
25361034-25361296,25361865-25362009
Length = 305
Score = 234 bits (573), Expect = 4e-62
Identities = 108/173 (62%), Positives = 131/173 (75%)
Frame = +1
Query: 103 LGQKMLTSRMETYVYKRRADGTHVINLRRTWEKLVLAARAVVAIENPADVFVISSRPFGQ 282
LG K +ME YVYKRR DG ++INL +TWEKL LAAR +VAIENP D+ V S+RP+GQ
Sbjct: 29 LGTKNCDFQMERYVYKRRTDGIYIINLGKTWEKLQLAARVIVAIENPQDIIVQSARPYGQ 88
Query: 283 RAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQDHQPITEASYVNIPV 462
RAVLKFA +TGA IAGR TPG FTNQ+Q +F EPRLLI+ DP DHQPI E++ NIP
Sbjct: 89 RAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDPRTDHQPIKESALGNIPT 148
Query: 463 IALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRXQRWDV 621
IA C+TDSP+R+VDI IP N K SIG ++WLLAR VL++RG + +WDV
Sbjct: 149 IAFCDTDSPMRYVDIGIPANNKGKQSIGCLFWLLARMVLQMRGTILPGHKWDV 201
Score = 29.1 bits (62), Expect = 3.0
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +3
Query: 51 LALNEEXVTKMLAATTHLGAENVNFQ 128
L+ E+ + MLAA HLG +N +FQ
Sbjct: 12 LSQREQDIQMMLAADVHLGTKNCDFQ 37
>01_06_0364 -
28749825-28750053,28750442-28750621,28751018-28751147,
28751442-28751756,28752033-28752075,28752108-28752500
Length = 429
Score = 28.7 bits (61), Expect = 3.9
Identities = 14/31 (45%), Positives = 16/31 (51%)
Frame = +3
Query: 261 LITALRSACCTEVCRAHRCYAYCGAFHTRCF 353
L+ LR T+V RAHRC A T CF
Sbjct: 97 LLPLLRRRGATDVVRAHRCIPLHPALITSCF 127
>08_01_0152 -
1190358-1190462,1190648-1190765,1191134-1192691,
1193338-1193530
Length = 657
Score = 28.3 bits (60), Expect = 5.2
Identities = 18/52 (34%), Positives = 25/52 (48%)
Frame = -3
Query: 301 QTSVQHADRRAVMR*RTHQRGSRWLRQHEQPEQVFPRYDAS*SHGYHQHVVC 146
+ SV + D+ ++ RT RGS L QPE + PRY+ H VC
Sbjct: 269 KNSVNNDDKPMLVSIRTKGRGSSTLPSIAQPEPL-PRYNKHWRRKAHSMCVC 319
>06_01_0497 + 3555919-3557154,3557815-3558143,3558177-3558775,
3558919-3560393
Length = 1212
Score = 27.9 bits (59), Expect = 6.9
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = +2
Query: 125 PEWRPMSTNDVLMVPM*STCVVPGKNLFWLLVLS*P 232
P WRP++ L++ S C++ G ++W+ +L P
Sbjct: 1018 PAWRPLADPPYLVLNKTSPCILGG--IYWIAILPSP 1051
>01_06_0575 -
30357556-30357582,30357698-30357944,30358039-30358161,
30358275-30358301,30358475-30358633,30359764-30359948,
30360225-30360293,30360432-30362354,30363018-30363339,
30363506-30363543
Length = 1039
Score = 27.9 bits (59), Expect = 6.9
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +3
Query: 162 WYPCDQLASYLGKTCSGCSCCRSHREP 242
++PC +GKT S C + HR P
Sbjct: 615 YHPCQPTVRLMGKTVSVCERSKEHRVP 641
>05_03_0609 -
16161801-16162848,16163525-16163682,16163806-16163835,
16164242-16164323,16164599-16164672
Length = 463
Score = 27.5 bits (58), Expect = 9.1
Identities = 13/33 (39%), Positives = 15/33 (45%)
Frame = -1
Query: 564 QQPPHQTNRVGRLGVAWDSNVHKS*WGVCVAQS 466
+ PP Q RVG GV H WG C +S
Sbjct: 17 EMPPVQPGRVGLWGVTVRCRDHGRCWGFCWVES 49
>03_02_0792 +
11236785-11237337,11237711-11238261,11238446-11238628,
11238768-11238966,11239055-11239761
Length = 730
Score = 27.5 bits (58), Expect = 9.1
Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Frame = +1
Query: 307 HTGATPIAGRFTPGAFTNQIQAAFREPRLLI--VLDPAQDHQPITEASYVNIPVIALCNT 480
HT +T R TP AF + AA E R+ + + ++ EA Y +I V + +
Sbjct: 270 HTLSTGETVRVTPAAFDSVTPAAIDETRVAVAAIRQKSEFSDVRVEAQYRHIEVFDMRSP 329
Query: 481 DSPLR 495
+ P++
Sbjct: 330 EQPMQ 334
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,328,826
Number of Sequences: 37544
Number of extensions: 453602
Number of successful extensions: 1167
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1167
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1502076244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -