Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_D23
         (653 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC57A7.08 |pzh1||serine/threonine protein phosphatase Pzh1|Sch...    29   0.77 
SPBC359.02 |alr2||alanine racemase Alr2 |Schizosaccharomyces pom...    27   3.1  
SPAP8A3.13c |||Vid 24 family protein|Schizosaccharomyces pombe|c...    25   7.2  
SPBP23A10.13 |orc4|orp4|origin recognition complex subunit Orc4|...    25   9.5  
SPCC663.15c |||conserved fungal protein|Schizosaccharomyces pomb...    25   9.5  

>SPAC57A7.08 |pzh1||serine/threonine protein phosphatase
           Pzh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 515

 Score = 28.7 bits (61), Expect = 0.77
 Identities = 14/35 (40%), Positives = 15/35 (42%)
 Frame = +3

Query: 468 PWLPPPIFPSFKVADXAVXELHAQEDXDVVDPRPT 572
           P LPPP  P       AV + H QED       PT
Sbjct: 66  PSLPPPPSPGILATSPAVLQKHQQEDSGNSSQSPT 100


>SPBC359.02 |alr2||alanine racemase Alr2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 370

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +3

Query: 462 QAPWLPPPIFPSFKVADXAVXELHAQEDXDV 554
           +AP LP P+ P+ K+    V   H ++D  +
Sbjct: 234 KAPELPKPLIPAMKLMSTIVCVKHVEKDQPI 264


>SPAP8A3.13c |||Vid 24 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 547

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = +1

Query: 406 SWCYWSGGEPVKGSPYAADKRRGYHRQYFPRSRWRT 513
           +W     G P   S   ++ +R +HR  FP +R R+
Sbjct: 21  AWADSGSGFPNPNSNDVSNSQRNHHRHMFPLARIRS 56


>SPBP23A10.13 |orc4|orp4|origin recognition complex subunit
           Orc4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 972

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = +3

Query: 432 ASKRLTLCCRQAPWLPPPIFPSFKVA 509
           +S RL L  RQ+ + PPP  P+F+VA
Sbjct: 476 SSDRLPLL-RQSQFTPPPKKPNFEVA 500


>SPCC663.15c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 657

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 14/40 (35%), Positives = 18/40 (45%)
 Frame = +3

Query: 501 KVADXAVXELHAQEDXDVVDPRPTKGVHXEMXVXXEALYH 620
           +V D A    H++ +    DP   KGVH  M     AL H
Sbjct: 385 EVPDTASETEHSEIEDFHFDPYSEKGVHIAMRYFDAALTH 424


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,119,435
Number of Sequences: 5004
Number of extensions: 33424
Number of successful extensions: 76
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)