Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP03_F_D23
(653 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY061440-1|AAL28988.1| 352|Drosophila melanogaster LD37574p pro... 138 8e-33
AE014296-2093|AAF49961.3| 352|Drosophila melanogaster CG5654-PA... 138 8e-33
U49120-1|AAB94634.1| 359|Drosophila melanogaster Y-box protein ... 131 7e-31
AY118360-1|AAM48389.1| 195|Drosophila melanogaster RE05342p pro... 56 4e-08
AF521096-1|AAM77748.1| 195|Drosophila melanogaster RNA-binding ... 56 4e-08
AE014296-983|AAF50758.2| 195|Drosophila melanogaster CG17334-PA... 56 4e-08
AY060441-1|AAL25480.1| 143|Drosophila melanogaster LD47312p pro... 33 0.45
AE014296-2798|AAN11740.1| 143|Drosophila melanogaster CG9705-PB... 33 0.45
AE014296-2797|AAF49414.1| 143|Drosophila melanogaster CG9705-PA... 33 0.45
AE014296-2033|AAF50007.2| 417|Drosophila melanogaster CG10361-P... 29 4.2
AY069212-1|AAL39357.1| 328|Drosophila melanogaster GH26215p pro... 28 9.6
AE014296-3089|AAF49205.1| 328|Drosophila melanogaster CG6836-PA... 28 9.6
>AY061440-1|AAL28988.1| 352|Drosophila melanogaster LD37574p
protein.
Length = 352
Score = 138 bits (333), Expect = 8e-33
Identities = 65/75 (86%), Positives = 68/75 (90%)
Frame = +2
Query: 200 VIAXKVSGTVKWFNVKSGYGFINRNDTXEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAV 379
VIA KV+GTVKWFNVKSGYGFINRNDT EDVFVHQ+AIARNNP+KAVRSVGDGE VEF V
Sbjct: 57 VIATKVTGTVKWFNVKSGYGFINRNDTREDVFVHQSAIARNNPKKAVRSVGDGEVVEFDV 116
Query: 380 VAGEKGFEAAGVTGP 424
V GEKG EAA VTGP
Sbjct: 117 VIGEKGNEAANVTGP 131
Score = 32.3 bits (70), Expect = 0.59
Identities = 14/26 (53%), Positives = 20/26 (76%)
Frame = +1
Query: 427 GEPVKGSPYAADKRRGYHRQYFPRSR 504
GEPV+GS +AADKRR + R + ++R
Sbjct: 133 GEPVRGSQFAADKRRNF-RPWMKKNR 157
>AE014296-2093|AAF49961.3| 352|Drosophila melanogaster CG5654-PA
protein.
Length = 352
Score = 138 bits (333), Expect = 8e-33
Identities = 65/75 (86%), Positives = 68/75 (90%)
Frame = +2
Query: 200 VIAXKVSGTVKWFNVKSGYGFINRNDTXEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAV 379
VIA KV+GTVKWFNVKSGYGFINRNDT EDVFVHQ+AIARNNP+KAVRSVGDGE VEF V
Sbjct: 57 VIATKVTGTVKWFNVKSGYGFINRNDTREDVFVHQSAIARNNPKKAVRSVGDGEVVEFDV 116
Query: 380 VAGEKGFEAAGVTGP 424
V GEKG EAA VTGP
Sbjct: 117 VIGEKGNEAANVTGP 131
Score = 32.3 bits (70), Expect = 0.59
Identities = 14/26 (53%), Positives = 20/26 (76%)
Frame = +1
Query: 427 GEPVKGSPYAADKRRGYHRQYFPRSR 504
GEPV+GS +AADKRR + R + ++R
Sbjct: 133 GEPVRGSQFAADKRRNF-RPWMKKNR 157
>U49120-1|AAB94634.1| 359|Drosophila melanogaster Y-box protein
protein.
Length = 359
Score = 131 bits (317), Expect = 7e-31
Identities = 64/75 (85%), Positives = 67/75 (89%)
Frame = +2
Query: 200 VIAXKVSGTVKWFNVKSGYGFINRNDTXEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAV 379
VIA KV+GTVKWFNVKSGYGFINRNDT EDVFVHQ+AIA NNP+KAVRSVGDGE VEF V
Sbjct: 58 VIATKVTGTVKWFNVKSGYGFINRNDTREDVFVHQSAIA-NNPKKAVRSVGDGEVVEFDV 116
Query: 380 VAGEKGFEAAGVTGP 424
V GEKG EAA VTGP
Sbjct: 117 VIGEKGNEAANVTGP 131
Score = 32.3 bits (70), Expect = 0.59
Identities = 14/26 (53%), Positives = 20/26 (76%)
Frame = +1
Query: 427 GEPVKGSPYAADKRRGYHRQYFPRSR 504
GEPV+GS +AADKRR + R + ++R
Sbjct: 133 GEPVRGSQFAADKRRNF-RPWMKKNR 157
>AY118360-1|AAM48389.1| 195|Drosophila melanogaster RE05342p
protein.
Length = 195
Score = 56.0 bits (129), Expect = 4e-08
Identities = 28/66 (42%), Positives = 38/66 (57%)
Frame = +2
Query: 221 GTVKWFNVKSGYGFINRNDTXEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGF 400
G KWFNV G+GF+ ND ++VFVHQ+ I + RS+G+ E VEF +G
Sbjct: 41 GKCKWFNVAKGWGFLTPNDGGQEVFVHQSVIQMS----GFRSLGEQEEVEFECQRTSRGL 96
Query: 401 EAAGVT 418
EA V+
Sbjct: 97 EATRVS 102
>AF521096-1|AAM77748.1| 195|Drosophila melanogaster RNA-binding
protein LIN-28 protein.
Length = 195
Score = 56.0 bits (129), Expect = 4e-08
Identities = 28/66 (42%), Positives = 38/66 (57%)
Frame = +2
Query: 221 GTVKWFNVKSGYGFINRNDTXEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGF 400
G KWFNV G+GF+ ND ++VFVHQ+ I + RS+G+ E VEF +G
Sbjct: 41 GKCKWFNVAKGWGFLTPNDGGQEVFVHQSVIQMS----GFRSLGEQEEVEFECQRTSRGL 96
Query: 401 EAAGVT 418
EA V+
Sbjct: 97 EATRVS 102
>AE014296-983|AAF50758.2| 195|Drosophila melanogaster CG17334-PA
protein.
Length = 195
Score = 56.0 bits (129), Expect = 4e-08
Identities = 28/66 (42%), Positives = 38/66 (57%)
Frame = +2
Query: 221 GTVKWFNVKSGYGFINRNDTXEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGF 400
G KWFNV G+GF+ ND ++VFVHQ+ I + RS+G+ E VEF +G
Sbjct: 41 GKCKWFNVAKGWGFLTPNDGGQEVFVHQSVIQMS----GFRSLGEQEEVEFECQRTSRGL 96
Query: 401 EAAGVT 418
EA V+
Sbjct: 97 EATRVS 102
>AY060441-1|AAL25480.1| 143|Drosophila melanogaster LD47312p
protein.
Length = 143
Score = 32.7 bits (71), Expect = 0.45
Identities = 16/33 (48%), Positives = 20/33 (60%)
Frame = +2
Query: 215 VSGTVKWFNVKSGYGFINRNDTXEDVFVHQTAI 313
V+G VK F+ G+GFI N EDVF H + I
Sbjct: 55 VTGMVKSFSRTKGHGFITPNAGGEDVFCHVSDI 87
>AE014296-2798|AAN11740.1| 143|Drosophila melanogaster CG9705-PB,
isoform B protein.
Length = 143
Score = 32.7 bits (71), Expect = 0.45
Identities = 16/33 (48%), Positives = 20/33 (60%)
Frame = +2
Query: 215 VSGTVKWFNVKSGYGFINRNDTXEDVFVHQTAI 313
V+G VK F+ G+GFI N EDVF H + I
Sbjct: 55 VTGMVKSFSRTKGHGFITPNAGGEDVFCHVSDI 87
>AE014296-2797|AAF49414.1| 143|Drosophila melanogaster CG9705-PA,
isoform A protein.
Length = 143
Score = 32.7 bits (71), Expect = 0.45
Identities = 16/33 (48%), Positives = 20/33 (60%)
Frame = +2
Query: 215 VSGTVKWFNVKSGYGFINRNDTXEDVFVHQTAI 313
V+G VK F+ G+GFI N EDVF H + I
Sbjct: 55 VTGMVKSFSRTKGHGFITPNAGGEDVFCHVSDI 87
>AE014296-2033|AAF50007.2| 417|Drosophila melanogaster CG10361-PA
protein.
Length = 417
Score = 29.5 bits (63), Expect = 4.2
Identities = 23/63 (36%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Frame = +2
Query: 305 TAIARNNPRKAVRSVGDGE-AVEFAVVAGEKGFEAAGVTGPVVSQ*KAHLMLQTSAVATT 481
T N+P V +GD A +FA +G G + PVV Q KA + +Q SA T
Sbjct: 338 TIAGENHPICPVM-LGDARLASQFADEMLTRGIYVIGFSYPVVPQGKARIRVQISAAHTE 396
Query: 482 ANI 490
A I
Sbjct: 397 AEI 399
>AY069212-1|AAL39357.1| 328|Drosophila melanogaster GH26215p
protein.
Length = 328
Score = 28.3 bits (60), Expect = 9.6
Identities = 15/50 (30%), Positives = 22/50 (44%)
Frame = +3
Query: 276 TPXKMCLCIRLPSPVTTHVRLCARSATERRWSLPWLPGRKALKQLVLLVR 425
TP C C+ LP + T +LC + W +P+ G L +L R
Sbjct: 153 TPPCCCCCLCLPMVIPTKAKLCI--SRYMVWQMPFWQGSIMLVMNILYYR 200
>AE014296-3089|AAF49205.1| 328|Drosophila melanogaster CG6836-PA
protein.
Length = 328
Score = 28.3 bits (60), Expect = 9.6
Identities = 15/50 (30%), Positives = 22/50 (44%)
Frame = +3
Query: 276 TPXKMCLCIRLPSPVTTHVRLCARSATERRWSLPWLPGRKALKQLVLLVR 425
TP C C+ LP + T +LC + W +P+ G L +L R
Sbjct: 153 TPPCCCCCLCLPMVIPTKAKLCI--SRYMVWQMPFWQGSIMLVMNILYYR 200
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,903,466
Number of Sequences: 53049
Number of extensions: 442212
Number of successful extensions: 1224
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1223
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2786177250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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