Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_D23
         (653 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81525-8|CAB04257.1|  208|Caenorhabditis elegans Hypothetical pr...   116   2e-26
U88173-8|AAK21380.1|  267|Caenorhabditis elegans C.elegans y-box...    79   3e-15
U80450-3|AAB37828.1|  265|Caenorhabditis elegans C.elegans y-box...    75   4e-14
Z73424-7|CAA97783.1|  294|Caenorhabditis elegans Hypothetical pr...    72   3e-13
AL023839-3|CAA19509.1|  294|Caenorhabditis elegans Hypothetical ...    72   3e-13
Z81494-3|CAB61009.1|  196|Caenorhabditis elegans Hypothetical pr...    55   4e-08
Z81494-2|CAB61008.1|  227|Caenorhabditis elegans Hypothetical pr...    55   4e-08
U75915-1|AAB49759.1|  227|Caenorhabditis elegans Lin-28 protein.       55   4e-08
U75912-1|AAC47476.1|  227|Caenorhabditis elegans LIN-28 protein.       55   4e-08
Z74028-2|CAA98428.1| 1058|Caenorhabditis elegans Hypothetical pr...    28   5.0  

>Z81525-8|CAB04257.1|  208|Caenorhabditis elegans Hypothetical
           protein F33A8.3 protein.
          Length = 208

 Score =  116 bits (278), Expect = 2e-26
 Identities = 53/75 (70%), Positives = 58/75 (77%)
 Frame = +2

Query: 200 VIAXKVSGTVKWFNVKSGYGFINRNDTXEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAV 379
           V A KV GTVKWFNVK+GYGFINR DT ED+FVHQTAI  NNP K +RS+GD E V F +
Sbjct: 16  VKATKVKGTVKWFNVKNGYGFINRTDTNEDIFVHQTAIINNNPNKYLRSLGDNEEVMFDI 75

Query: 380 VAGEKGFEAAGVTGP 424
           V G KG EAA VTGP
Sbjct: 76  VEGSKGLEAASVTGP 90


>U88173-8|AAK21380.1|  267|Caenorhabditis elegans C.elegans y-box
           protein 2 protein.
          Length = 267

 Score = 79.0 bits (186), Expect = 3e-15
 Identities = 39/75 (52%), Positives = 52/75 (69%), Gaps = 1/75 (1%)
 Frame = +2

Query: 203 IAXKVSGTVKWFNVKSGYGFINRNDTXEDVFVHQTAIARNNPRK-AVRSVGDGEAVEFAV 379
           I   + G VKW++V   YGFI+RND  +D+FVHQTAIA++   K  +R++GD E V F +
Sbjct: 62  ITTGLQGKVKWYSVLRRYGFISRNDGEKDIFVHQTAIAKSATEKFYLRTLGDDEEVLFDL 121

Query: 380 VAGEKGFEAAGVTGP 424
           V G+ G EAA VTGP
Sbjct: 122 VEGKNGPEAANVTGP 136


>U80450-3|AAB37828.1|  265|Caenorhabditis elegans C.elegans y-box
           protein 3 protein.
          Length = 265

 Score = 74.9 bits (176), Expect = 4e-14
 Identities = 37/76 (48%), Positives = 53/76 (69%), Gaps = 1/76 (1%)
 Frame = +2

Query: 200 VIAXKVSGTVKWFNVKSGYGFINRNDTXEDVFVHQTAIARNNPRK-AVRSVGDGEAVEFA 376
           V+   + G VKW++V   YGFI+R+D  +DVFVHQTAI++++  K  +R++ D E V F 
Sbjct: 59  VLTAGLQGKVKWYSVLRRYGFISRSDGEKDVFVHQTAISKSDTEKFYLRTLADEEEVLFD 118

Query: 377 VVAGEKGFEAAGVTGP 424
           +V G+ G EAA VTGP
Sbjct: 119 LVDGKNGPEAANVTGP 134


>Z73424-7|CAA97783.1|  294|Caenorhabditis elegans Hypothetical
           protein Y39A1C.3 protein.
          Length = 294

 Score = 72.1 bits (169), Expect = 3e-13
 Identities = 40/79 (50%), Positives = 51/79 (64%), Gaps = 4/79 (5%)
 Frame = +2

Query: 200 VIAXKVSGTVKWFNVKSGYGFINRN---DTXEDVFVHQTAIARNNPRKA-VRSVGDGEAV 367
           VI   V G VKWF+V+  YGF+ R+   D  ED FVHQTAI +++  K  +R++ D E V
Sbjct: 84  VIETGVKGHVKWFSVRGRYGFVARDKPTDENEDFFVHQTAITKSSTIKFYLRTLDDDEPV 143

Query: 368 EFAVVAGEKGFEAAGVTGP 424
            F +V G KG EAA VTGP
Sbjct: 144 VFDIVEGLKGPEAANVTGP 162


>AL023839-3|CAA19509.1|  294|Caenorhabditis elegans Hypothetical
           protein Y39A1C.3 protein.
          Length = 294

 Score = 72.1 bits (169), Expect = 3e-13
 Identities = 40/79 (50%), Positives = 51/79 (64%), Gaps = 4/79 (5%)
 Frame = +2

Query: 200 VIAXKVSGTVKWFNVKSGYGFINRN---DTXEDVFVHQTAIARNNPRKA-VRSVGDGEAV 367
           VI   V G VKWF+V+  YGF+ R+   D  ED FVHQTAI +++  K  +R++ D E V
Sbjct: 84  VIETGVKGHVKWFSVRGRYGFVARDKPTDENEDFFVHQTAITKSSTIKFYLRTLDDDEPV 143

Query: 368 EFAVVAGEKGFEAAGVTGP 424
            F +V G KG EAA VTGP
Sbjct: 144 VFDIVEGLKGPEAANVTGP 162


>Z81494-3|CAB61009.1|  196|Caenorhabditis elegans Hypothetical
           protein F02E9.2b protein.
          Length = 196

 Score = 55.2 bits (127), Expect = 4e-08
 Identities = 31/74 (41%), Positives = 43/74 (58%), Gaps = 2/74 (2%)
 Frame = +2

Query: 221 GTVKWFNVKSGYGFINRNDTXEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVV--AGEK 394
           G+ KWFNV  GYGF+  + T ED+FVHQ+    N   +  RS+ +GE V + +   +  K
Sbjct: 24  GSCKWFNVSKGYGFVIDDITGEDLFVHQS----NLNMQGFRSLDEGERVSYYIQERSNGK 79

Query: 395 GFEAAGVTGPVVSQ 436
           G EA  V+G V  Q
Sbjct: 80  GREAYAVSGEVEGQ 93


>Z81494-2|CAB61008.1|  227|Caenorhabditis elegans Hypothetical
           protein F02E9.2a protein.
          Length = 227

 Score = 55.2 bits (127), Expect = 4e-08
 Identities = 31/74 (41%), Positives = 43/74 (58%), Gaps = 2/74 (2%)
 Frame = +2

Query: 221 GTVKWFNVKSGYGFINRNDTXEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVV--AGEK 394
           G+ KWFNV  GYGF+  + T ED+FVHQ+    N   +  RS+ +GE V + +   +  K
Sbjct: 55  GSCKWFNVSKGYGFVIDDITGEDLFVHQS----NLNMQGFRSLDEGERVSYYIQERSNGK 110

Query: 395 GFEAAGVTGPVVSQ 436
           G EA  V+G V  Q
Sbjct: 111 GREAYAVSGEVEGQ 124


>U75915-1|AAB49759.1|  227|Caenorhabditis elegans Lin-28 protein.
          Length = 227

 Score = 55.2 bits (127), Expect = 4e-08
 Identities = 31/74 (41%), Positives = 43/74 (58%), Gaps = 2/74 (2%)
 Frame = +2

Query: 221 GTVKWFNVKSGYGFINRNDTXEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVV--AGEK 394
           G+ KWFNV  GYGF+  + T ED+FVHQ+    N   +  RS+ +GE V + +   +  K
Sbjct: 55  GSCKWFNVSKGYGFVIDDITGEDLFVHQS----NLNMQGFRSLDEGERVSYYIQERSNGK 110

Query: 395 GFEAAGVTGPVVSQ 436
           G EA  V+G V  Q
Sbjct: 111 GREAYAVSGEVEGQ 124


>U75912-1|AAC47476.1|  227|Caenorhabditis elegans LIN-28 protein.
          Length = 227

 Score = 55.2 bits (127), Expect = 4e-08
 Identities = 31/74 (41%), Positives = 43/74 (58%), Gaps = 2/74 (2%)
 Frame = +2

Query: 221 GTVKWFNVKSGYGFINRNDTXEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVV--AGEK 394
           G+ KWFNV  GYGF+  + T ED+FVHQ+    N   +  RS+ +GE V + +   +  K
Sbjct: 55  GSCKWFNVSKGYGFVIDDITGEDLFVHQS----NLNMQGFRSLDEGERVSYYIQERSNGK 110

Query: 395 GFEAAGVTGPVVSQ 436
           G EA  V+G V  Q
Sbjct: 111 GREAYAVSGEVEGQ 124


>Z74028-2|CAA98428.1| 1058|Caenorhabditis elegans Hypothetical protein
            C14C10.4 protein.
          Length = 1058

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 10/26 (38%), Positives = 19/26 (73%)
 Frame = +3

Query: 18   LRRKAVNIEEKVVEYFTIFATIAASP 95
            + R+ +NIE +V++YFT  A+ + +P
Sbjct: 956  IERQNLNIESRVLQYFTTLASASENP 981


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,232,901
Number of Sequences: 27780
Number of extensions: 207218
Number of successful extensions: 504
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 493
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 498
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)