Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP03_F_D17
(433 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0319 - 16712572-16712654,16712756-16712797,16713955-167142... 155 2e-38
03_01_0276 + 2124538-2124550,2124678-2124962,2126813-2126854,212... 155 2e-38
02_05_1201 + 34929577-34929589,34930252-34930587,34931378-349314... 155 2e-38
12_02_1115 - 26173351-26173725,26174241-26174344,26174812-26174845 51 5e-07
08_01_0935 - 9218271-9219860,9219959-9220232,9220506-9221767 29 1.6
07_01_0064 + 463358-464341 29 1.6
04_04_1074 + 30628192-30628456,30628924-30629144 28 3.7
08_01_0843 - 8276619-8278991 27 4.9
12_02_0035 - 12563503-12564405,12564494-12565611,12565709-125662... 27 6.5
03_05_0291 - 22837412-22838128 27 6.5
03_03_0140 + 14771293-14771821,14772343-14772455,14772723-147728... 27 6.5
01_06_1575 + 38339970-38340786,38340884-38342001,38342099-38343055 27 6.5
01_06_0680 + 31132683-31133499,31133597-31134717,31134811-31135713 27 6.5
01_01_0553 - 4067921-4068180,4068437-4068455,4069101-4070225 27 6.5
11_06_0434 - 23512921-23513529 27 8.6
11_01_0746 + 6294277-6294687 27 8.6
>10_08_0319 -
16712572-16712654,16712756-16712797,16713955-16714239,
16714346-16714358
Length = 140
Score = 155 bits (375), Expect = 2e-38
Identities = 75/123 (60%), Positives = 93/123 (75%)
Frame = +2
Query: 17 AGSEIPYLPGSPSWEQ*STAPTTQGQRICM*SLSKAIKGRLNRLPAAGSGDMIVATVKKG 196
AG++ G P + A T + + + S+ K IKGRLNRLP+A GDM++ATVKKG
Sbjct: 10 AGNKFRMSLGLPVAATVNCADNTGAKNLYIISV-KGIKGRLNRLPSACVGDMVMATVKKG 68
Query: 197 KPELRKKVMPAVVIRQRKPFXXRDGXFIYFEDNAGVIXNNXGEMKGSAITGPVAKECADL 376
KP+LRKKVMPAV++RQRKP+ +DG ++YFEDNAGVI N GEMKGSAITGP+ KECADL
Sbjct: 69 KPDLRKKVMPAVIVRQRKPWRRKDGVYMYFEDNAGVIVNPKGEMKGSAITGPIGKECADL 128
Query: 377 WPR 385
WPR
Sbjct: 129 WPR 131
>03_01_0276 +
2124538-2124550,2124678-2124962,2126813-2126854,
2126943-2127025
Length = 140
Score = 155 bits (375), Expect = 2e-38
Identities = 75/123 (60%), Positives = 93/123 (75%)
Frame = +2
Query: 17 AGSEIPYLPGSPSWEQ*STAPTTQGQRICM*SLSKAIKGRLNRLPAAGSGDMIVATVKKG 196
AG++ G P + A T + + + S+ K IKGRLNRLP+A GDM++ATVKKG
Sbjct: 10 AGNKFRMSLGLPVAATVNCADNTGAKNLYIISV-KGIKGRLNRLPSACVGDMVMATVKKG 68
Query: 197 KPELRKKVMPAVVIRQRKPFXXRDGXFIYFEDNAGVIXNNXGEMKGSAITGPVAKECADL 376
KP+LRKKVMPAV++RQRKP+ +DG ++YFEDNAGVI N GEMKGSAITGP+ KECADL
Sbjct: 69 KPDLRKKVMPAVIVRQRKPWRRKDGVYMYFEDNAGVIVNPKGEMKGSAITGPIGKECADL 128
Query: 377 WPR 385
WPR
Sbjct: 129 WPR 131
>02_05_1201 +
34929577-34929589,34930252-34930587,34931378-34931419,
34931630-34931712
Length = 157
Score = 155 bits (375), Expect = 2e-38
Identities = 75/123 (60%), Positives = 93/123 (75%)
Frame = +2
Query: 17 AGSEIPYLPGSPSWEQ*STAPTTQGQRICM*SLSKAIKGRLNRLPAAGSGDMIVATVKKG 196
AG++ G P + A T + + + S+ K IKGRLNRLP+A GDM++ATVKKG
Sbjct: 27 AGNKFRMSLGLPVAATVNCADNTGAKNLYIISV-KGIKGRLNRLPSACVGDMVMATVKKG 85
Query: 197 KPELRKKVMPAVVIRQRKPFXXRDGXFIYFEDNAGVIXNNXGEMKGSAITGPVAKECADL 376
KP+LRKKVMPAV++RQRKP+ +DG ++YFEDNAGVI N GEMKGSAITGP+ KECADL
Sbjct: 86 KPDLRKKVMPAVIVRQRKPWRRKDGVYMYFEDNAGVIVNPKGEMKGSAITGPIGKECADL 145
Query: 377 WPR 385
WPR
Sbjct: 146 WPR 148
>12_02_1115 - 26173351-26173725,26174241-26174344,26174812-26174845
Length = 170
Score = 50.8 bits (116), Expect = 5e-07
Identities = 28/70 (40%), Positives = 40/70 (57%), Gaps = 3/70 (4%)
Frame = +2
Query: 164 GDMIVATVKKGKPELRKK---VMPAVVIRQRKPFXXRDGXFIYFEDNAGVIXNNXGEMKG 334
GD I+ +VK+ +P + K V+ VV+R DG I F+DNA V+ NN GE+ G
Sbjct: 84 GDTIIGSVKEAQPRGKVKKGDVVYGVVVRAAMKRGRNDGSEIQFDDNAIVLVNNKGELIG 143
Query: 335 SAITGPVAKE 364
+ + GPV E
Sbjct: 144 TRVFGPVPHE 153
>08_01_0935 - 9218271-9219860,9219959-9220232,9220506-9221767
Length = 1041
Score = 29.1 bits (62), Expect = 1.6
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +2
Query: 11 VPAGSEIPYLPGSPSWEQ*STAPTTQ 88
V G+ +P L +PSWE+ S APT +
Sbjct: 567 VARGAAVPTLKMNPSWEKPSVAPTLE 592
>07_01_0064 + 463358-464341
Length = 327
Score = 29.1 bits (62), Expect = 1.6
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +1
Query: 58 GAVINCADNTGAKNLYVIAVQGYQRSPEQTAGGRFW 165
G+ + AD+ G K + +AV GY + + GG +W
Sbjct: 251 GSGVFTADSCGTKLDHAVAVVGYGAEADGSGGGGYW 286
>04_04_1074 + 30628192-30628456,30628924-30629144
Length = 161
Score = 27.9 bits (59), Expect = 3.7
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +3
Query: 21 VAKFRISLGLPAGSSNQLRRQHRGKESVCDRCP 119
+A F S PA + +LRRQH + VCD P
Sbjct: 1 MAFFAGSSKAPASARLKLRRQHDQQREVCDALP 33
>08_01_0843 - 8276619-8278991
Length = 790
Score = 27.5 bits (58), Expect = 4.9
Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Frame = -2
Query: 93 CPCVVGAVD-YCSQLGDPGRYGISLPAGTTT 4
C C + D YCS+ P RYG +P TT
Sbjct: 390 CACEIAMFDSYCSKQMLPIRYGKRVPGSNTT 420
>12_02_0035 -
12563503-12564405,12564494-12565611,12565709-12566239,
12566337-12567153
Length = 1122
Score = 27.1 bits (57), Expect = 6.5
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = -3
Query: 179 PQSCPQNRPPAVCSGDL 129
P+SCP + PP V S DL
Sbjct: 257 PESCPSSLPPFVVSSDL 273
Score = 27.1 bits (57), Expect = 6.5
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = -3
Query: 179 PQSCPQNRPPAVCSGDL 129
P+SCP + PP V S DL
Sbjct: 434 PESCPSSLPPFVVSSDL 450
>03_05_0291 - 22837412-22838128
Length = 238
Score = 27.1 bits (57), Expect = 6.5
Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Frame = -2
Query: 399 AFEAIRGHRSAHSLATGPVMAEPFI--SPLLLXMTPALSS 286
+++A+ GH+++H T P MA + P +PA SS
Sbjct: 100 SYQALGGHKTSHRPRTPPTMAAVVVVDEPAATTASPAASS 139
>03_03_0140 +
14771293-14771821,14772343-14772455,14772723-14772830,
14772931-14772973,14773454-14773593,14774216-14774446
Length = 387
Score = 27.1 bits (57), Expect = 6.5
Identities = 16/48 (33%), Positives = 24/48 (50%)
Frame = -2
Query: 369 AHSLATGPVMAEPFISPLLLXMTPALSSKYINXPSRXXNGFRCLMTTA 226
AH ATGP ++ +TP LSS + + P+R + R L+ A
Sbjct: 76 AHVFATGPGGRPDLARSAVMRVTPGLSS-FADEPARAGDSLRPLIDFA 122
>01_06_1575 + 38339970-38340786,38340884-38342001,38342099-38343055
Length = 963
Score = 27.1 bits (57), Expect = 6.5
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = -3
Query: 179 PQSCPQNRPPAVCSGDL 129
P+SCP + PP V S DL
Sbjct: 257 PESCPSSLPPFVVSSDL 273
>01_06_0680 + 31132683-31133499,31133597-31134717,31134811-31135713
Length = 946
Score = 27.1 bits (57), Expect = 6.5
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = -3
Query: 179 PQSCPQNRPPAVCSGDL 129
P+SCP + PP V S DL
Sbjct: 257 PESCPSSLPPFVVSSDL 273
>01_01_0553 - 4067921-4068180,4068437-4068455,4069101-4070225
Length = 467
Score = 27.1 bits (57), Expect = 6.5
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -2
Query: 144 LFRRPLIALDSDHIQILCPCVVGAVDYCSQLGD 46
LFRR L+S H Q++ P + D+ S G+
Sbjct: 361 LFRRIASCLNSSHFQLIKPFIGDPTDHISSSGE 393
>11_06_0434 - 23512921-23513529
Length = 202
Score = 26.6 bits (56), Expect = 8.6
Identities = 18/62 (29%), Positives = 30/62 (48%)
Frame = +2
Query: 119 KAIKGRLNRLPAAGSGDMIVATVKKGKPELRKKVMPAVVIRQRKPFXXRDGXFIYFEDNA 298
KA+ + AG GD VA +GK L ++ + A++ + KP+ + F +DN
Sbjct: 18 KAVVYEVEAAATAGEGDTPVA---EGKVRLSQESVDAILAEETKPYPNME-YFRSLKDNP 73
Query: 299 GV 304
V
Sbjct: 74 AV 75
>11_01_0746 + 6294277-6294687
Length = 136
Score = 26.6 bits (56), Expect = 8.6
Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 4/65 (6%)
Frame = +1
Query: 52 QLGAVINCADNTGAKNLYVIAVQGYQRSPEQ----TAGGRFWGHDCGHSQKG*T*TPEKG 219
+LGA N DN G + + V G + + + T GG G + S+ G + P G
Sbjct: 22 ELGAGSNRRDNRGGRIRLLDDVGGRRATTTKGAAATLGGNSTGEEAARSRSGASSRPTGG 81
Query: 220 NAGSG 234
G G
Sbjct: 82 GVGKG 86
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,279,722
Number of Sequences: 37544
Number of extensions: 253156
Number of successful extensions: 654
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 643
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 648
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 814473264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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