Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP03_F_D17
(433 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U32305-14|AAK18857.1| 140|Caenorhabditis elegans Ribosomal prot... 153 4e-38
AF192746-1|AAF08804.1| 401|Caenorhabditis elegans synapsin prot... 27 4.4
AC006743-3|AAF60504.2| 401|Caenorhabditis elegans Synapsin prot... 27 4.4
AC006743-2|AAM97971.1| 474|Caenorhabditis elegans Synapsin prot... 27 4.4
Z82258-4|CAL44968.1| 1467|Caenorhabditis elegans Hypothetical pr... 27 7.7
Z82258-3|CAL44967.1| 1538|Caenorhabditis elegans Hypothetical pr... 27 7.7
AL023835-19|CAL44978.1| 1467|Caenorhabditis elegans Hypothetical... 27 7.7
AL023835-18|CAL44977.1| 1538|Caenorhabditis elegans Hypothetical... 27 7.7
>U32305-14|AAK18857.1| 140|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 23 protein.
Length = 140
Score = 153 bits (372), Expect = 4e-38
Identities = 71/87 (81%), Positives = 76/87 (87%)
Frame = +2
Query: 125 IKGRLNRLPAAGSGDMIVATVKKGKPELRKKVMPAVVIRQRKPFXXRDGXFIYFEDNAGV 304
I+GRLNRLP+AG GDM V +VKKGKPELRKKV+ VVIRQRK F +DG FIYFEDNAGV
Sbjct: 45 IRGRLNRLPSAGVGDMFVCSVKKGKPELRKKVLQGVVIRQRKQFRRKDGTFIYFEDNAGV 104
Query: 305 IXNNXGEMKGSAITGPVAKECADLWPR 385
I NN GEMKGSAITGPVAKECADLWPR
Sbjct: 105 IVNNKGEMKGSAITGPVAKECADLWPR 131
Score = 43.6 bits (98), Expect = 6e-05
Identities = 18/23 (78%), Positives = 22/23 (95%)
Frame = +1
Query: 55 LGAVINCADNTGAKNLYVIAVQG 123
+GAV+NCADNTGAKNL+VI+V G
Sbjct: 22 VGAVMNCADNTGAKNLFVISVYG 44
Score = 26.6 bits (56), Expect = 7.7
Identities = 11/13 (84%), Positives = 12/13 (92%)
Frame = +3
Query: 24 AKFRISLGLPAGS 62
AKFRISLGLP G+
Sbjct: 12 AKFRISLGLPVGA 24
>AF192746-1|AAF08804.1| 401|Caenorhabditis elegans synapsin
protein.
Length = 401
Score = 27.5 bits (58), Expect = 4.4
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -1
Query: 169 VPRTGRRQSVQATFDSLGQRSHT 101
+PRTG R+SV D++GQ T
Sbjct: 372 IPRTGSRESVSYVDDTMGQLKRT 394
>AC006743-3|AAF60504.2| 401|Caenorhabditis elegans Synapsin protein
1, isoform a protein.
Length = 401
Score = 27.5 bits (58), Expect = 4.4
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -1
Query: 169 VPRTGRRQSVQATFDSLGQRSHT 101
+PRTG R+SV D++GQ T
Sbjct: 372 IPRTGSRESVSYVDDTMGQLKRT 394
>AC006743-2|AAM97971.1| 474|Caenorhabditis elegans Synapsin protein
1, isoform b protein.
Length = 474
Score = 27.5 bits (58), Expect = 4.4
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -1
Query: 169 VPRTGRRQSVQATFDSLGQRSHT 101
+PRTG R+SV D++GQ T
Sbjct: 445 IPRTGSRESVSYVDDTMGQLKRT 467
>Z82258-4|CAL44968.1| 1467|Caenorhabditis elegans Hypothetical protein
Y37A1B.17b protein.
Length = 1467
Score = 26.6 bits (56), Expect = 7.7
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Frame = +3
Query: 39 SLGLPAGSSNQLRRQHRGKESVCDRCPRLSKVA*TDCRRPVLGT*LWPQSKRV--NLNSG 212
SLGLP GS NQ +R + P S ++ +D +P++ + P K V +LN G
Sbjct: 1318 SLGLPTGSMNQ-KRSASAAAQPTNVWPTTSMMSRSDSPQPLIPSRPEPAVKNVYPSLNDG 1376
>Z82258-3|CAL44967.1| 1538|Caenorhabditis elegans Hypothetical protein
Y37A1B.17a protein.
Length = 1538
Score = 26.6 bits (56), Expect = 7.7
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Frame = +3
Query: 39 SLGLPAGSSNQLRRQHRGKESVCDRCPRLSKVA*TDCRRPVLGT*LWPQSKRV--NLNSG 212
SLGLP GS NQ +R + P S ++ +D +P++ + P K V +LN G
Sbjct: 1318 SLGLPTGSMNQ-KRSASAAAQPTNVWPTTSMMSRSDSPQPLIPSRPEPAVKNVYPSLNDG 1376
>AL023835-19|CAL44978.1| 1467|Caenorhabditis elegans Hypothetical
protein Y37A1B.17b protein.
Length = 1467
Score = 26.6 bits (56), Expect = 7.7
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Frame = +3
Query: 39 SLGLPAGSSNQLRRQHRGKESVCDRCPRLSKVA*TDCRRPVLGT*LWPQSKRV--NLNSG 212
SLGLP GS NQ +R + P S ++ +D +P++ + P K V +LN G
Sbjct: 1318 SLGLPTGSMNQ-KRSASAAAQPTNVWPTTSMMSRSDSPQPLIPSRPEPAVKNVYPSLNDG 1376
>AL023835-18|CAL44977.1| 1538|Caenorhabditis elegans Hypothetical
protein Y37A1B.17a protein.
Length = 1538
Score = 26.6 bits (56), Expect = 7.7
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Frame = +3
Query: 39 SLGLPAGSSNQLRRQHRGKESVCDRCPRLSKVA*TDCRRPVLGT*LWPQSKRV--NLNSG 212
SLGLP GS NQ +R + P S ++ +D +P++ + P K V +LN G
Sbjct: 1318 SLGLPTGSMNQ-KRSASAAAQPTNVWPTTSMMSRSDSPQPLIPSRPEPAVKNVYPSLNDG 1376
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,774,675
Number of Sequences: 27780
Number of extensions: 188795
Number of successful extensions: 426
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 421
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 426
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 724655464
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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