Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_D13
         (434 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A3CAS8 Cluster: Putative uncharacterized protein; n=2; ...    36   0.37 
UniRef50_Q93IZ8 Cluster: DNA ligase; n=2; Streptomyces|Rep: DNA ...    33   3.5  
UniRef50_Q7UR14 Cluster: Putative uncharacterized protein; n=1; ...    32   4.6  
UniRef50_Q29AY6 Cluster: GA18895-PA; n=1; Drosophila pseudoobscu...    32   4.6  
UniRef50_Q01033 Cluster: Uncharacterized gene 48 protein; n=7; r...    31   8.0  

>UniRef50_A3CAS8 Cluster: Putative uncharacterized protein; n=2;
           Oryza sativa|Rep: Putative uncharacterized protein -
           Oryza sativa subsp. japonica (Rice)
          Length = 243

 Score = 35.9 bits (79), Expect = 0.37
 Identities = 21/59 (35%), Positives = 24/59 (40%)
 Frame = +1

Query: 247 SGCRASVAAPALACCRAGSARGRPAQAPHKQSRVFFSVVYGRATHHTVVALCTHXRVQR 423
           S C   +    L  CRA   R RP  A  K   V F   Y  AT   V  +C+H  V R
Sbjct: 168 SKCGVDMQERRLLRCRAAETRNRPDPAEQKSGTVSFPRPYPVATWRRVGPICSHGTVVR 226


>UniRef50_Q93IZ8 Cluster: DNA ligase; n=2; Streptomyces|Rep: DNA
           ligase - Streptomyces coelicolor
          Length = 723

 Score = 32.7 bits (71), Expect = 3.5
 Identities = 17/62 (27%), Positives = 27/62 (43%)
 Frame = +2

Query: 248 VDAEPALQRPPWHAAGQVARAGGLRRPHTXXXXXXXXXXMAEQHITPSSHSALTXESSGS 427
           + A P  +RPP   A  ++  GG+ R  T             Q +  ++H+A    + GS
Sbjct: 1   MSAAPQAERPPRGGADPLSVVGGMIRAMTTPAAVIVDATAYAQAVEDAAHAAAAYYAGGS 60

Query: 428 SP 433
           SP
Sbjct: 61  SP 62


>UniRef50_Q7UR14 Cluster: Putative uncharacterized protein; n=1;
           Pirellula sp.|Rep: Putative uncharacterized protein -
           Rhodopirellula baltica
          Length = 177

 Score = 32.3 bits (70), Expect = 4.6
 Identities = 14/47 (29%), Positives = 22/47 (46%)
 Frame = +1

Query: 184 WCGTKSXVCDVYYIKSVVVLSSGCRASVAAPALACCRAGSARGRPAQ 324
           W   +   C    +     ++SGC ASV  PA +CC++ +  G   Q
Sbjct: 43  WPMLQPPCCCAASVSDNATVASGCCASVETPAASCCKSTTTAGPETQ 89


>UniRef50_Q29AY6 Cluster: GA18895-PA; n=1; Drosophila
            pseudoobscura|Rep: GA18895-PA - Drosophila pseudoobscura
            (Fruit fly)
          Length = 1059

 Score = 32.3 bits (70), Expect = 4.6
 Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = +1

Query: 265  VAAPALACCRAGSARGRPAQAPHKQSRVFFSVVYGRA-THHTVVALCT 405
            V A A+A   A +A G+PA +PH        + +  A THHT   L T
Sbjct: 945  VGAAAVAAAAAAAAFGQPAPSPHTHPHPHTHLTHPAALTHHTPAHLAT 992


>UniRef50_Q01033 Cluster: Uncharacterized gene 48 protein; n=7;
           root|Rep: Uncharacterized gene 48 protein - Saimiriine
           herpesvirus 2 (strain 11) (SaHV-2) (Herpesvirus saimiri)
          Length = 797

 Score = 31.5 bits (68), Expect = 8.0
 Identities = 22/83 (26%), Positives = 37/83 (44%), Gaps = 5/83 (6%)
 Frame = +1

Query: 103 TICSKIRLLD-TQQCIIYVRYK*TKCDDWCGTKSXVCDVYY---IKSVVVLSSGCR-ASV 267
           T   K+ L++ TQ     +R    K  D C  KS + +++Y    + +++L  GC   + 
Sbjct: 72  TTKQKLNLIECTQGLKFLIRSLYEKIKDQCDVKSSIREIFYDCKARLLLLLEEGCGCGAC 131

Query: 268 AAPALACCRAGSARGRPAQAPHK 336
            A + A  + G     P   PHK
Sbjct: 132 CATSAALSKVGHLGRPPKLTPHK 154


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 397,990,294
Number of Sequences: 1657284
Number of extensions: 7041648
Number of successful extensions: 18898
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 18291
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18890
length of database: 575,637,011
effective HSP length: 93
effective length of database: 421,509,599
effective search space used: 21496989549
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)