Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_D13
         (434 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0287 - 20460956-20461282,20462051-20462201,20462285-204625...    31   0.31 
01_01_0017 + 133311-133615,133698-133824,133912-134253                 28   2.9  
09_03_0128 + 12584166-12585320                                         27   5.0  
06_03_0943 - 26191798-26192244,26192802-26192966,26193515-261936...    27   8.7  
05_07_0071 - 27481876-27482737,27484328-27484950                       27   8.7  

>01_05_0287 -
           20460956-20461282,20462051-20462201,20462285-20462519,
           20462796-20463006,20463122-20463258,20463339-20463467,
           20464558-20465359
          Length = 663

 Score = 31.5 bits (68), Expect = 0.31
 Identities = 15/33 (45%), Positives = 15/33 (45%)
 Frame = -1

Query: 338 CLCGACAGRPRALPARQHARAGAATLALHPLDN 240
           CLCG  AG PR   ARQ    G A       DN
Sbjct: 14  CLCGGAAGDPRTAVARQECAPGGAVSGPALADN 46


>01_01_0017 + 133311-133615,133698-133824,133912-134253
          Length = 257

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +1

Query: 259 ASVAAPALACCRAGSARGRPAQAPH 333
           +S  A A ACC++ S    PA APH
Sbjct: 6   SSSTASAAACCKSRSRNPPPAPAPH 30


>09_03_0128 + 12584166-12585320
          Length = 384

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 15/32 (46%), Positives = 20/32 (62%)
 Frame = +1

Query: 253 CRASVAAPALACCRAGSARGRPAQAPHKQSRV 348
           CRA+++A ALA   A +A   PA A H+Q  V
Sbjct: 185 CRAALSARALAAL-AAAAADTPAAAQHRQPDV 215


>06_03_0943 -
           26191798-26192244,26192802-26192966,26193515-26193668,
           26194153-26194346,26194494-26194695,26194899-26195103,
           26195672-26195843
          Length = 512

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +1

Query: 232 VVVLSSGCRASVAAPALACCRAGSARGRPAQAPH 333
           +++L++G  A+ AA  +A C+A   +  P   PH
Sbjct: 14  LLLLAAGAPAAPAAAEVATCKAWLVQSIPTDMPH 47


>05_07_0071 - 27481876-27482737,27484328-27484950
          Length = 494

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +1

Query: 232 VVVLSSGCRASVAAPALACCRAGSARGRPAQAPHKQ 339
           VV++   C A  AA A A    G +RGRP ++   Q
Sbjct: 6   VVLMVVVCLAVAAAAASAASGGGHSRGRPGKSARLQ 41


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,848,206
Number of Sequences: 37544
Number of extensions: 201745
Number of successful extensions: 615
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 603
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 615
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 826450812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)