Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_D12
         (608 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23H4.04 |||tRNA|Schizosaccharomyces pombe|chr 1|||Manual           29   0.40 
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    28   1.2  
SPBC1711.12 |||serine peptidase |Schizosaccharomyces pombe|chr 2...    25   6.5  
SPCC663.02 |wtf14||wtf element Wtf14|Schizosaccharomyces pombe|c...    25   6.5  
SPBC21C3.05 |sap62||zinc finger protein Sap62|Schizosaccharomyce...    25   8.7  

>SPAC23H4.04 |||tRNA|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 415

 Score = 29.5 bits (63), Expect = 0.40
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = -2

Query: 112 VACLRFRHFKNYKNLIF*ISLD*FEN 35
           ++C RF   K Y NL+F  SLD +EN
Sbjct: 94  ISCRRFNFEKEYWNLVFEPSLDLYEN 119


>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = -3

Query: 594 AQPKSLFCQWGIQSRPSPXXPNVTXDMIPEKPPITNTVPKVT 469
           AQ  S   Q G+  +P    P+VT + +  +P I +TVP  T
Sbjct: 750 AQLPSATGQSGVVQQPYQTQPSVTNNNVATQPVIASTVPVQT 791


>SPBC1711.12 |||serine peptidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 683

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +2

Query: 251 FEDVHHWYDTVFNSCWWIFEXXFYIIH 331
           FED +HW     NS  W  E   +I+H
Sbjct: 644 FEDENHWVIKPDNSLRWHKEVLSWILH 670


>SPCC663.02 |wtf14||wtf element Wtf14|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 222

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -1

Query: 464 VSNSHHHRCXXLNKEKPKTSKAEHNTML 381
           + N+HH     L++  PK  K EH T +
Sbjct: 1   MENNHHLAKDSLDELNPKRGKGEHETQV 28


>SPBC21C3.05 |sap62||zinc finger protein Sap62|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 217

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -3

Query: 396 TQHNVMVKKNCVAMKKPGNKISCI 325
           +Q +V VKK+ V + +PG K+S I
Sbjct: 105 SQSHVQVKKSVVKIGRPGYKVSKI 128


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,136,893
Number of Sequences: 5004
Number of extensions: 37187
Number of successful extensions: 96
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)