Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_D11
         (609 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_1106 - 10187609-10190041,10190292-10191932                       33   0.23 
12_02_0784 - 23130783-23131273,23131701-23131778,23131913-231319...    29   3.8  

>07_01_1106 - 10187609-10190041,10190292-10191932
          Length = 1357

 Score = 32.7 bits (71), Expect = 0.23
 Identities = 18/58 (31%), Positives = 26/58 (44%)
 Frame = +2

Query: 11  LKIYSTLKLIHRNLSSSXLYVIIRIKMPTYELALLLRNMPKPELKTSLKRISHAIFDC 184
           L  YS L ++ RN  S      IR  +PT +  + LR++  P  +      SH I  C
Sbjct: 237 LHYYSLLSMMGRNHKSQSTSAKIRDTIPTLDALIQLRSLSDPVFRIPAAATSHCILLC 294


>12_02_0784 -
           23130783-23131273,23131701-23131778,23131913-23131969,
           23132062-23132116,23132738-23133010
          Length = 317

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 21/106 (19%), Positives = 40/106 (37%)
 Frame = +2

Query: 86  KMPTYELALLLRNMPKPELKTSLKRISHAIFDCXXXXXXXXXLGFRPMPYKSTAHGMTHK 265
           +M  YE+  L+      E++  + ++   + +           G R + YK        +
Sbjct: 128 RMRHYEVVYLIHEDRVEEVEDVVSKVQDFVREKKGRIWRLNNWGLRRLAYKIKKA----R 183

Query: 266 EANYFIFKIDTPTKAVIDLKEEYKRDVDIVRQRFFKVKEXXRKACT 403
            ANY +   +   K + D K    +D  I+R    K  E   + C+
Sbjct: 184 HANYILMNFEIQAKYINDFKTLLDKDERIIRHLVMKRDEAITEDCS 229


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,843,011
Number of Sequences: 37544
Number of extensions: 243231
Number of successful extensions: 466
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 462
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 466
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1454766756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)