Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_D09
         (494 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13168| Best HMM Match : Ribosomal_S26e (HMM E-Value=0)             188   3e-48
SB_973| Best HMM Match : No HMM Matches (HMM E-Value=.)                36   0.024
SB_10952| Best HMM Match : Exo_endo_phos (HMM E-Value=4.1e-08)         28   3.7  
SB_21167| Best HMM Match : KH_1 (HMM E-Value=0)                        28   4.9  

>SB_13168| Best HMM Match : Ribosomal_S26e (HMM E-Value=0)
          Length = 289

 Score =  188 bits (457), Expect = 3e-48
 Identities = 85/98 (86%), Positives = 92/98 (93%)
 Frame = +3

Query: 48  MTRKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYP 227
           MT+KR NGGR+KHGRGHVK VRCTNCARCVPKDK+IKKFVIRNIVEAAAVRDI DASVY 
Sbjct: 1   MTKKRCNGGRSKHGRGHVKFVRCTNCARCVPKDKSIKKFVIRNIVEAAAVRDIADASVYE 60

Query: 228 MFQLPKLYAKLHYCVSCAIHSKVVRNRSKKDRRIRTPP 341
           ++ LPKLY KLHYCVSCAIHSKVVRNRSK+DR+IRTPP
Sbjct: 61  VYALPKLYVKLHYCVSCAIHSKVVRNRSKEDRKIRTPP 98


>SB_973| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1200

 Score = 35.5 bits (78), Expect = 0.024
 Identities = 29/77 (37%), Positives = 39/77 (50%), Gaps = 7/77 (9%)
 Frame = +3

Query: 123 CAR-CVPKDKAIKKFVIRNIVEAAAVRD--INDASVYPMFQLPKLYAKLHYC--VS--CA 281
           C R C+ +D+ I  FVI     AAAVRD  + D ++Y      +       C  VS  C 
Sbjct: 664 CERDCIMRDRTICDFVICG--RAAAVRDCIMRDRAIYNCVMSDRFIRDCVMCDRVSRDCL 721

Query: 282 IHSKVVRNRSKKDRRIR 332
           IH +VVR+   +DR IR
Sbjct: 722 IHDRVVRDCVMRDRVIR 738


>SB_10952| Best HMM Match : Exo_endo_phos (HMM E-Value=4.1e-08)
          Length = 558

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 7/49 (14%)
 Frame = -1

Query: 230 HWVYRGIVN------ISDRRRFYDVPNHELFDSLVLWH-APRAVCASHS 105
           H+  RGI N      +S+RR+F  V N E  D +VL H  P+A C+  S
Sbjct: 441 HYGIRGIANEWFSSYLSNRRQFVSVNNSE-SDEVVLTHGVPQAKCSIQS 488


>SB_21167| Best HMM Match : KH_1 (HMM E-Value=0)
          Length = 1650

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 13/53 (24%), Positives = 24/53 (45%)
 Frame = +3

Query: 6   FPAVLCSPGSEVRNMTRKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKF 164
           FP + C+P ++ +N            HG GH+++   T   R   +++  K F
Sbjct: 83  FPPLPCAPSTD-QNQANSNPAAKWRTHGTGHIRSTTVTQVFRVPLEERRYKLF 134


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,026,243
Number of Sequences: 59808
Number of extensions: 221656
Number of successful extensions: 580
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 546
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 580
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1062812967
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)