Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_D04
         (656 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    46   4e-07
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       25   0.84 
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    24   1.5  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          21   7.8  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      21   7.8  
AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.          21   7.8  

>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 45.6 bits (103), Expect = 4e-07
 Identities = 37/144 (25%), Positives = 67/144 (46%), Gaps = 5/144 (3%)
 Frame = +2

Query: 239 ALVTGCTDGIGKEYAKELAARGCDIVLVSRSLDKLKATAEEIXKEYXVXTKIIQADFXED 418
           ALVTG   GIGK   + L  +G  ++ ++  +DK+K   EE+ K        +Q D    
Sbjct: 10  ALVTGANSGIGKCLIECLVGKGMKVIGIAPQVDKMKTLVEEL-KSKPGKLVPLQCDLSNQ 68

Query: 419 DXI---YDNIXKEIAGLEIGTLVNNVGVSYTYPEYFLDLPEWNKLIPTLIKANVVAVTKM 589
           + I    + + K +  ++I  L+NN  ++        ++ +W K    +   N++ +T M
Sbjct: 69  NDILKVIEWVEKNLGAIDI--LINNATINIDVTLQNDEVLDWKK----IFDINLLGLTCM 122

Query: 590 TRIVLPEM--VXXEKGVVINIGSA 655
            + VL  M       G+++NI  A
Sbjct: 123 IQEVLKLMKKKGINNGIIVNINDA 146


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 24.6 bits (51), Expect = 0.84
 Identities = 16/47 (34%), Positives = 19/47 (40%)
 Frame = -3

Query: 333 RDRLTRTMSHPRAANSLAYSFPIPSVHPVTSAHFPLDLKSTQCTAGP 193
           RDRLT  M H   A  +A   P  S    T +  P    ST   + P
Sbjct: 334 RDRLTAMMHHLHVAKQMASPEPPKSSESSTGSSIPKLNLSTALMSQP 380


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +1

Query: 127 ICCIFYFLLP*ILVAFLVYVR 189
           + CI +FL+P + +A L Y+R
Sbjct: 208 LSCILFFLIPMVFIAVL-YIR 227


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = -1

Query: 518 RNIQDTYRKLRHY*PKYRFPDQQFP 444
           + I D Y K +   PKY   +  FP
Sbjct: 422 KTILDYYHKYKENLPKYTTEELNFP 446


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = -1

Query: 518 RNIQDTYRKLRHY*PKYRFPDQQFP 444
           + I D Y K +   PKY   +  FP
Sbjct: 422 KTILDYYHKYKENLPKYTTEELNFP 446


>AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.
          Length = 226

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = -1

Query: 518 RNIQDTYRKLRHY*PKYRFPDQQFP 444
           + I D Y K +   PKY   +  FP
Sbjct: 48  KTILDYYHKYKENLPKYTTEELNFP 72


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,478
Number of Sequences: 438
Number of extensions: 3203
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19734030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)