Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_D03
         (597 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC649.02 |rps1902|rps19-2, rps19|40S ribosomal protein S19|Sch...   108   5e-25
SPBC21C3.13 |rps1901|rps19-1|40S ribosomal protein S19|Schizosac...   108   5e-25
SPBC1778.02 |rap1||telomere binding protein Rap1|Schizosaccharom...    26   3.6  
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy...    25   6.3  
SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit |Schizosacc...    25   8.4  

>SPBC649.02 |rps1902|rps19-2, rps19|40S ribosomal protein
           S19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 143

 Score =  108 bits (260), Expect = 5e-25
 Identities = 48/87 (55%), Positives = 63/87 (72%)
 Frame = +3

Query: 246 YDPDWFYVRCAAILRHIYIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQSL 425
           YDPDW+YVR AAI RHIY+R  VGV  + K++GG    G+ PSH    SGS+ RK +QSL
Sbjct: 48  YDPDWYYVRAAAIARHIYLRKQVGVGRLCKVYGGSVNRGMRPSHHRDGSGSVQRKVVQSL 107

Query: 426 EALKLVEKVQDGGRILTTQGRRDLDRI 506
           E + ++EK  +GGR ++ QG+RDLDRI
Sbjct: 108 EKIGVLEKSDNGGRRISQQGQRDLDRI 134



 Score = 44.4 bits (100), Expect = 1e-05
 Identities = 19/44 (43%), Positives = 29/44 (65%)
 Frame = +2

Query: 104 MRSVTVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKE 235
           M  V+VKDV+  + +   AA LK++GK+  P+ +D+VKT   KE
Sbjct: 1   MAGVSVKDVDAQQFINAYAAFLKRSGKMTTPQWIDIVKTGTHKE 44


>SPBC21C3.13 |rps1901|rps19-1|40S ribosomal protein
           S19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 144

 Score =  108 bits (260), Expect = 5e-25
 Identities = 48/87 (55%), Positives = 63/87 (72%)
 Frame = +3

Query: 246 YDPDWFYVRCAAILRHIYIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQSL 425
           YDPDW+YVR AAI RHIY+R  VGV  + K++GG    G+ PSH    SGS+ RK +QSL
Sbjct: 48  YDPDWYYVRAAAIARHIYLRKQVGVGRLCKVYGGSVNRGMRPSHHRDGSGSVQRKVVQSL 107

Query: 426 EALKLVEKVQDGGRILTTQGRRDLDRI 506
           E + ++EK  +GGR ++ QG+RDLDRI
Sbjct: 108 EKIGVLEKSDNGGRRISQQGQRDLDRI 134



 Score = 45.6 bits (103), Expect = 6e-06
 Identities = 20/44 (45%), Positives = 29/44 (65%)
 Frame = +2

Query: 104 MRSVTVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKE 235
           M  V+VKDV+  K +   AA LK++GK+  P+ +D+VKT   KE
Sbjct: 1   MAGVSVKDVDAQKFITAYAAFLKRSGKMTTPQWIDIVKTGTHKE 44


>SPBC1778.02 |rap1||telomere binding protein
           Rap1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 693

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 15/55 (27%), Positives = 27/55 (49%)
 Frame = +2

Query: 65  NFRNSKITIYFCKMRSVTVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARF 229
           N R S    YF KMR +++     D+ +  + A+L + GK +    +  + + RF
Sbjct: 232 NKRYSDSYFYFSKMRRISIDVDYVDEDLNLINAYLSQFGKKRSLNELCALLSRRF 286


>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 709

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 9/28 (32%), Positives = 19/28 (67%)
 Frame = -2

Query: 344 TKDLGDSLDSNR*ANVNMTKDGSTTHIE 261
           ++D+G +L+ N+ +N+  TK+ S   I+
Sbjct: 109 SQDVGQNLEDNQISNIGTTKEASNAPIK 136


>SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 940

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = -2

Query: 125 PLL*RNASCRSKLLFYCYESFIVAVYSVYLMNNHV 21
           PL+     C      Y  ++ I+AV+S+Y ++NH+
Sbjct: 129 PLIPTVRQCLEHRHAYVRKNAILAVFSIYQVSNHL 163


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,285,461
Number of Sequences: 5004
Number of extensions: 42978
Number of successful extensions: 121
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)