Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_D03
         (597 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_04_0129 + 17520753-17520842,17521651-17521741,17521887-175220...   111   3e-25
02_01_0385 + 2783387-2783695,2784149-2785082,2785206-2785309,278...    28   4.9  
07_03_0493 + 18747427-18748356,18748594-18748697,18749586-187497...    28   6.5  
11_01_0645 + 5185341-5185568,5185773-5185823                           27   8.6  

>03_04_0129 +
           17520753-17520842,17521651-17521741,17521887-17522070,
           17522149-17522224
          Length = 146

 Score =  111 bits (268), Expect = 3e-25
 Identities = 46/87 (52%), Positives = 65/87 (74%)
 Frame = +3

Query: 246 YDPDWFYVRCAAILRHIYIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQSL 425
           YDPDW+Y R A+I R IY+R  +GV    KI+GGR+RNG  P HFC+SSG+I+R  LQ L
Sbjct: 51  YDPDWYYTRAASIARKIYLRQGIGVGGFQKIYGGRQRNGSRPPHFCKSSGAISRNILQQL 110

Query: 426 EALKLVEKVQDGGRILTTQGRRDLDRI 506
           + + +++    GGR++T+QGRRDLD++
Sbjct: 111 QKMGIIDVDPKGGRLITSQGRRDLDQV 137



 Score = 55.6 bits (128), Expect = 3e-08
 Identities = 24/40 (60%), Positives = 33/40 (82%)
 Frame = +2

Query: 116 TVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKE 235
           TVKDV   + VK  +AHLK++GK+++PE +D+VKTARFKE
Sbjct: 8   TVKDVNPHEFVKAYSAHLKRSGKMELPEWVDIVKTARFKE 47


>02_01_0385 +
           2783387-2783695,2784149-2785082,2785206-2785309,
           2785402-2785486,2785517-2787578,2787732-2787753,
           2788157-2788327,2791473-2791517,2792558-2793874,
           2793962-2794012,2794090-2794188,2794352-2794504,
           2794554-2794571
          Length = 1789

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = -3

Query: 223 SCLYKIHVLRYLDFARFF*VS-SDSFNNLVLFNILYCDGTHL 101
           S +YK+ +LRYLD +     S S SFN+L+    L    T+L
Sbjct: 550 SSVYKLKLLRYLDASSLRISSFSKSFNHLLNLQALILSNTYL 591


>07_03_0493 +
           18747427-18748356,18748594-18748697,18749586-18749795,
           18749992-18750597,18750819-18751095,18751163-18751310,
           18751957-18752044,18752167-18752284
          Length = 826

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 18/48 (37%), Positives = 23/48 (47%)
 Frame = -1

Query: 348 AHQRSW*QS*LQQVSECKYDEGWQHNAHRTNQGHSGASSLKRAVFTRS 205
           A QR   Q  L  VS     EGWQH++   +Q H   + L+  V  RS
Sbjct: 671 ADQRVSAQCSLAPVSHLHQQEGWQHSSFE-HQHHENQNFLEMEVRVRS 717


>11_01_0645 + 5185341-5185568,5185773-5185823
          Length = 92

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = +3

Query: 294 IYIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARK 410
           ++ +SP  +  +   + GR+R G  P    R +G IA +
Sbjct: 18  VHCKSPAALLGIESPYSGRRRVGARPRGGSRQAGQIAER 56


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,002,399
Number of Sequences: 37544
Number of extensions: 291517
Number of successful extensions: 759
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 749
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 759
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)