Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP03_F_D02
(644 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1220 - 24966169-24966327,24966421-24966552,24966639-249666... 309 1e-84
08_02_0478 + 17621678-17623768 32 0.45
05_04_0322 + 20239793-20240127,20240176-20240728,20241317-202414... 29 2.4
08_01_0892 - 8778097-8778236,8778390-8778486,8778568-8778747,877... 29 3.2
07_01_0214 + 1595917-1596526,1597127-1597140,1598414-1598743,159... 29 3.2
08_01_0346 - 3063440-3064189 28 7.3
01_06_1329 + 36354340-36354493,36355781-36355942,36356279-363564... 28 7.3
11_06_0406 - 23192363-23194911,23195152-23195247,23195622-23196090 27 9.7
08_02_0840 + 21715077-21716962,21717541-21717814,21718265-21718579 27 9.7
07_03_0723 + 20954827-20954905,20954974-20956277 27 9.7
>07_03_1220 -
24966169-24966327,24966421-24966552,24966639-24966693,
24967496-24967667,24967771-24967918,24968015-24968050
Length = 233
Score = 309 bits (758), Expect = 1e-84
Identities = 151/187 (80%), Positives = 162/187 (86%)
Frame = +3
Query: 84 AELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRXIRELTSVVQKRFN 263
AELNE LTRELAEDGYSGVEVRVTP+R+EIII ATRTQ+VLGEKGR IRELTSVVQKRFN
Sbjct: 21 AELNEMLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFN 80
Query: 264 IPEQSVXLYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVV 443
PE V LYAEKV RGLCAIAQAESLRYKL+GGLAVRRACYGVLRF+MESGA+GCEV+V
Sbjct: 81 FPENGVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIV 140
Query: 444 SGKLRGQRAKSMKFVHGLMIHSGDPCNDYVNTATRHVLLRQGVLXIKVKIMLPWDQQGKN 623
SGKLR QRAKSMKF G MI SG P N Y+++A RHVLLRQGVL IKVKIML WD +GK
Sbjct: 141 SGKLRAQRAKSMKFKDGYMISSGYPVNLYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKQ 200
Query: 624 GPXKPQP 644
GP P P
Sbjct: 201 GPMTPLP 207
>08_02_0478 + 17621678-17623768
Length = 696
Score = 31.9 bits (69), Expect = 0.45
Identities = 12/32 (37%), Positives = 22/32 (68%)
Frame = +3
Query: 480 KFVHGLMIHSGDPCNDYVNTATRHVLLRQGVL 575
K +HGL+IHSG ND+V+++ + + G++
Sbjct: 421 KQIHGLVIHSGFASNDFVSSSLIFMYSKSGII 452
>05_04_0322 +
20239793-20240127,20240176-20240728,20241317-20241425,
20244456-20244723,20244943-20245197,20245594-20246539
Length = 821
Score = 29.5 bits (63), Expect = 2.4
Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Frame = +2
Query: 299 GGYSWSLRYRPG-RISKIQAYRRSRCTSCLLWC 394
G SWS RY+ ISK Y RC C++ C
Sbjct: 665 GALSWSRRYQIAIGISKGLPYLHERCRDCIIHC 697
>08_01_0892 -
8778097-8778236,8778390-8778486,8778568-8778747,
8779138-8779247,8781153-8781294,8782298-8782686,
8782752-8782834,8783524-8785244,8785894-8786040,
8786121-8786264,8786669-8786741,8787413-8787633
Length = 1148
Score = 29.1 bits (62), Expect = 3.2
Identities = 16/76 (21%), Positives = 35/76 (46%)
Frame = -1
Query: 572 YSLPEKHMSGSSVDVIIARVSRVDHESMYKLH*FGTLTTQLARYNNFTTTGTRFHDETEN 393
+ L + + GS +++ V R D +++Y+ G ++ +NN +++G HD N
Sbjct: 739 FKLNQVCIDGSRDELLETDVIRQDIKALYQSIDMGLVSEATVCFNNVSSSGLSVHDTGGN 798
Query: 392 TIASTTYSETSDKLVS 345
I ++ +S
Sbjct: 799 VIGQGDQDSEKNRYLS 814
>07_01_0214 +
1595917-1596526,1597127-1597140,1598414-1598743,
1598853-1598963,1599113-1599269,1603366-1603619,
1603762-1603960,1604341-1604498
Length = 610
Score = 29.1 bits (62), Expect = 3.2
Identities = 16/35 (45%), Positives = 16/35 (45%)
Frame = -3
Query: 483 TSLIWHVDHAACQIQQLHNHGHQIP**NGEHHSKH 379
T L H AA Q H HGH G HHSKH
Sbjct: 247 TPLALHQAAAAAGPSQYHGHGHPHH-GGGHHHSKH 280
>08_01_0346 - 3063440-3064189
Length = 249
Score = 27.9 bits (59), Expect = 7.3
Identities = 13/23 (56%), Positives = 14/23 (60%)
Frame = +3
Query: 333 AESLRYKLIGGLAVRRACYGVLR 401
A S L+GG A ACYGVLR
Sbjct: 221 ARSAARVLLGGWAAMAACYGVLR 243
>01_06_1329 +
36354340-36354493,36355781-36355942,36356279-36356457,
36356719-36356918,36356938-36357014,36357110-36357111,
36357594-36357701,36357806-36358024,36358167-36358448
Length = 460
Score = 27.9 bits (59), Expect = 7.3
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 4/44 (9%)
Frame = -2
Query: 292 AYNXTDCSGMLNRFCTTEVSSRIXRPFSPS----TLCVLVAIIM 173
A+ TD +G+L+ CT +V S++ S S TLC+ II+
Sbjct: 332 AHALTDRNGLLSLLCTPDVGSKLGGRASASRYTNTLCITRTIII 375
>11_06_0406 - 23192363-23194911,23195152-23195247,23195622-23196090
Length = 1037
Score = 27.5 bits (58), Expect = 9.7
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = -3
Query: 513 LQSGS*VHVQTSLIWHVDHAACQIQQLHNHGH 418
+QSG+ LIWH+ + C+I+ H H
Sbjct: 753 IQSGAPRCSHVILIWHIATSLCEIKLAQEHDH 784
>08_02_0840 + 21715077-21716962,21717541-21717814,21718265-21718579
Length = 824
Score = 27.5 bits (58), Expect = 9.7
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 6/40 (15%)
Frame = -3
Query: 525 HCKGLQSGS*VHV-QTSLIWHVDHA-----ACQIQQLHNH 424
H GS + V +TSL+WH + A +CQ ++L +H
Sbjct: 657 HYSDATDGSYIEVKETSLVWHYEEADPDFGSCQAKELQDH 696
>07_03_0723 + 20954827-20954905,20954974-20956277
Length = 460
Score = 27.5 bits (58), Expect = 9.7
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +3
Query: 477 MKFVHGLMIHSGDPCNDYVNTATRHVLLRQ 566
++ VHGLM H DP +D A VL Q
Sbjct: 27 IRLVHGLMTHGVDPLSDIYLFAVLIVLFEQ 56
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,262,121
Number of Sequences: 37544
Number of extensions: 351912
Number of successful extensions: 892
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 873
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 892
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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