Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_D02
         (644 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39851-9|AAF99870.1|  247|Caenorhabditis elegans Ribosomal prote...   300   6e-82
AL034393-1|CAA22308.1| 1634|Caenorhabditis elegans Hypothetical ...    29   2.8  
Z34802-8|CAH10787.1|  704|Caenorhabditis elegans Hypothetical pr...    29   3.7  
Z34802-7|CAA84338.2|  828|Caenorhabditis elegans Hypothetical pr...    29   3.7  
U70856-4|AAB09167.1| 2090|Caenorhabditis elegans Hypothetical pr...    28   4.9  
U70856-3|AAB09166.1| 2153|Caenorhabditis elegans Gei-4(four) int...    28   4.9  

>U39851-9|AAF99870.1|  247|Caenorhabditis elegans Ribosomal protein,
           small subunitprotein 3 protein.
          Length = 247

 Score =  300 bits (736), Expect = 6e-82
 Identities = 144/187 (77%), Positives = 161/187 (86%)
 Frame = +3

Query: 84  AELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRXIRELTSVVQKRFN 263
           AELN FL +ELAEDGYSGVEVR TP R+E+IIMATRTQ+VLGE+GR I+ELTSVVQKRF 
Sbjct: 21  AELNNFLMKELAEDGYSGVEVRSTPARAEVIIMATRTQNVLGERGRRIKELTSVVQKRFG 80

Query: 264 IPEQSVXLYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVV 443
             E SV LYAEKV+ RGLCA+AQ ESLRYKL+GGLAVRRACYGVLRFIMESGA+G EV+V
Sbjct: 81  FEEGSVELYAEKVSNRGLCAVAQCESLRYKLVGGLAVRRACYGVLRFIMESGAQGVEVIV 140

Query: 444 SGKLRGQRAKSMKFVHGLMIHSGDPCNDYVNTATRHVLLRQGVLXIKVKIMLPWDQQGKN 623
           SGKLRGQRAK+MKFV GLMIHSG P NDY+  A RHV LRQGV+ IKVKIMLP+D +G+N
Sbjct: 141 SGKLRGQRAKAMKFVDGLMIHSGHPVNDYIQQAVRHVQLRQGVIGIKVKIMLPYDPRGQN 200

Query: 624 GPXKPQP 644
           GP    P
Sbjct: 201 GPRNALP 207


>AL034393-1|CAA22308.1| 1634|Caenorhabditis elegans Hypothetical
           protein Y18D10A.1 protein.
          Length = 1634

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 13/40 (32%), Positives = 25/40 (62%)
 Frame = +3

Query: 192 TQSVLGEKGRXIRELTSVVQKRFNIPEQSVXLYAEKVATR 311
           + S+ G+KG+ +REL + + K  ++ E++  + AE  A R
Sbjct: 396 SSSIHGKKGKTVRELQTEMMKGESVKEKAARMRAEASAGR 435


>Z34802-8|CAH10787.1|  704|Caenorhabditis elegans Hypothetical
           protein M88.5b protein.
          Length = 704

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 14/54 (25%), Positives = 25/54 (46%)
 Frame = +3

Query: 114 LAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRXIRELTSVVQKRFNIPEQ 275
           L   G  G    +  IR+E+ +       ++G+ G+ +REL  +      IPE+
Sbjct: 543 LPSSGMDGDRSHMLRIRTEVSVPTRIIGRIIGKGGQNVRELQRITGAVVKIPEE 596


>Z34802-7|CAA84338.2|  828|Caenorhabditis elegans Hypothetical
           protein M88.5a protein.
          Length = 828

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 14/54 (25%), Positives = 25/54 (46%)
 Frame = +3

Query: 114 LAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRXIRELTSVVQKRFNIPEQ 275
           L   G  G    +  IR+E+ +       ++G+ G+ +REL  +      IPE+
Sbjct: 667 LPSSGMDGDRSHMLRIRTEVSVPTRIIGRIIGKGGQNVRELQRITGAVVKIPEE 720


>U70856-4|AAB09167.1| 2090|Caenorhabditis elegans Hypothetical protein
            F57F4.4 protein.
          Length = 2090

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 13/23 (56%), Positives = 13/23 (56%)
 Frame = +2

Query: 533  QHCYQTCASQARSTXNQGQNHVA 601
            Q CY  CAS   ST  Q QNH A
Sbjct: 1799 QGCYGDCASITISTTIQNQNHTA 1821


>U70856-3|AAB09166.1| 2153|Caenorhabditis elegans Gei-4(four)
            interacting proteinprotein 1 protein.
          Length = 2153

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 13/23 (56%), Positives = 13/23 (56%)
 Frame = +2

Query: 533  QHCYQTCASQARSTXNQGQNHVA 601
            Q CY  CAS   ST  Q QNH A
Sbjct: 1799 QGCYGDCASITISTTIQNQNHTA 1821


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,057,186
Number of Sequences: 27780
Number of extensions: 282813
Number of successful extensions: 782
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 756
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 782
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1423653030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)