Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_C23
         (653 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.15c |ksg1||serine/threonine protein kinase Ksg1|Schizosa...    33   0.048
SPACUNK12.02c |cmk1||calcium/calmodulin-dependent protein kinase...    30   0.34 
SPAC20G4.03c |hri1||eIF2 alpha kinase Hri1|Schizosaccharomyces p...    29   0.44 
SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr 1||...    29   0.77 
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc...    27   3.1  
SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1 |S...    26   4.1  
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|...    26   5.5  
SPBC19C2.05 |ran1|pat1|serine/threonine protein kinase Ran1|Schi...    26   5.5  
SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter Trk2|Sch...    26   5.5  
SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase Cdc...    26   5.5  
SPBC1778.10c |ppk21|SPBC4C3.11|serine/threonine protein kinase P...    25   7.2  
SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosacchar...    25   9.5  
SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase ki...    25   9.5  

>SPCC576.15c |ksg1||serine/threonine protein kinase
           Ksg1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 592

 Score = 32.7 bits (71), Expect = 0.048
 Identities = 13/28 (46%), Positives = 20/28 (71%)
 Frame = +2

Query: 569 GEVLGEGAYASVQTCVNIYTGLEFAVKI 652
           GE+LGEG+Y++V T     T  E+A+K+
Sbjct: 102 GEILGEGSYSTVLTATENSTKREYAIKV 129


>SPACUNK12.02c |cmk1||calcium/calmodulin-dependent protein kinase
           Cmk1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 335

 Score = 29.9 bits (64), Expect = 0.34
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = +2

Query: 569 GEVLGEGAYASVQTCVNIYTGLEFAVKI 652
           G VLG G YA+V+  V+I T   +A KI
Sbjct: 34  GRVLGGGTYATVREAVHIETNKMYAAKI 61


>SPAC20G4.03c |hri1||eIF2 alpha kinase Hri1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 704

 Score = 29.5 bits (63), Expect = 0.44
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = +2

Query: 572 EVLGEGAYASVQTCVNIYTGLEFAVK 649
           E+LG+G Y SV    N + G+E+A+K
Sbjct: 228 ELLGKGGYGSVYKARNKFDGVEYALK 253


>SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1116

 Score = 28.7 bits (61), Expect = 0.77
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +2

Query: 563 LTGEVLGEGAYASVQTCVNIYTGLEFAVK 649
           + GE++G G Y  V   +NI TG   AVK
Sbjct: 826 MKGELIGNGTYGKVFLAMNINTGELIAVK 854


>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 529

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 13/51 (25%), Positives = 22/51 (43%)
 Frame = +2

Query: 299 AVSTYQAIKMVKKVSEESVDSGVGRCSSQSGSERESDETPRGAEQSAPVDI 451
           A++    IK  K      +  G  RC +   +  +SD     ++ S PVD+
Sbjct: 462 AINAIDRIKQKKGYENYRISYGKDRCGNPPRTNSKSDVLSVSSDMSMPVDL 512


>SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +2

Query: 569 GEVLGEGAYASVQTCVNIYTGLEFAVKI 652
           G+ +G G+   V+   ++ TG +FA+KI
Sbjct: 128 GKTIGAGSMGKVKVAHHLKTGEQFAIKI 155


>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
           Sen1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1687

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +2

Query: 536 TSCFQDLYKLTGEVLGEGAYA 598
           TSC Q  Y+L  E L +G+Y+
Sbjct: 63  TSCIQAYYELRNESLAKGSYS 83


>SPBC19C2.05 |ran1|pat1|serine/threonine protein kinase
           Ran1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 470

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +2

Query: 575 VLGEGAYASVQTCVNIYTGLEFAVK 649
           ++G GAY  V    +IY G  +AVK
Sbjct: 23  IIGAGAYGVVYKAEDIYDGTLYAVK 47


>SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter
           Trk2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 880

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 6/55 (10%)
 Frame = +3

Query: 84  F*ECLFITFRHNLRT------SFSTVVLFSLISRIIFGVFFFLHLLTLYRFHVEK 230
           F + L+  F H  R+      S +T VLF  ++ + F  FFF  +L L   +V+K
Sbjct: 600 FQQALYFLFEHPRRSFTLLFPSKTTWVLFLNLTLLNFASFFFFMVLDLGNSYVDK 654


>SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase
           Cdc7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1062

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +2

Query: 569 GEVLGEGAYASVQTCVNIYTGLEFAVK 649
           G+ LG+GA+ +V   +NI  G   AVK
Sbjct: 12  GDCLGKGAFGAVYRGLNIKNGETVAVK 38


>SPBC1778.10c |ppk21|SPBC4C3.11|serine/threonine protein kinase
           Ppk21|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 550

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 10/44 (22%), Positives = 26/44 (59%)
 Frame = +2

Query: 521 GSSVVTSCFQDLYKLTGEVLGEGAYASVQTCVNIYTGLEFAVKI 652
           G+S + S       + G+++G+G+++ V+   +  +  E+A+K+
Sbjct: 41  GTSHIGSIKSPADYVFGDIIGDGSFSKVRRATDKKSWKEYAIKV 84


>SPAC2F7.03c |pom1||DYRK family protein kinase
           Pom1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1087

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +2

Query: 572 EVLGEGAYASVQTCVNIYTGLEFAVKI 652
           + LG+G++  V  C++  TG   A+KI
Sbjct: 703 DFLGKGSFGQVLRCIDYETGKLVALKI 729


>SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase kinase
            Win1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1436

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +2

Query: 569  GEVLGEGAYASVQTCVNIYTGLEFAVK 649
            G ++G G++ +V   VN+ TG   AVK
Sbjct: 1123 GGLIGSGSFGTVYRAVNLDTGDLMAVK 1149


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,309,272
Number of Sequences: 5004
Number of extensions: 40948
Number of successful extensions: 158
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)