Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP03_F_C16
(645 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC26A3.04 |rpl2002|rpl20, rpl20-2|60S ribosomal protein L20|Sc... 135 6e-33
SPAC3A12.10 |rpl2001|rpl20-1, rpl20, yl17b, rpl18a-2|60S ribosom... 135 6e-33
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro... 28 1.3
SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz... 26 4.0
SPBC1718.07c |zfs1|moc4|transcription factor Zfs1 |Schizosacchar... 26 5.3
SPAC10F6.13c |||aspartate aminotransferase |Schizosaccharomyces ... 25 7.1
SPAC57A7.08 |pzh1||serine/threonine protein phosphatase Pzh1|Sch... 25 7.1
SPAC11G7.06c |mug132||S. pombe specific UPF0300 family protein 3... 25 9.3
>SPAC26A3.04 |rpl2002|rpl20, rpl20-2|60S ribosomal protein
L20|Schizosaccharomyces pombe|chr 1|||Manual
Length = 176
Score = 135 bits (326), Expect = 6e-33
Identities = 73/145 (50%), Positives = 87/145 (60%), Gaps = 4/145 (2%)
Frame = +1
Query: 148 NPIVAKSRFWYFLRQLKKFKKTTGEIVXXXXXXXXXXXXXXNFGIWLRYESRSGVHNMYR 327
N VAKSR+WYFL+ + K KK TGEIV FGIW+RY+SRSG HNMY+
Sbjct: 32 NESVAKSRYWYFLKMINKVKKATGEIVAINEISEPKPLKAKVFGIWIRYDSRSGTHNMYK 91
Query: 328 EYRDLSVXGAVTQCYRDMGARHRARAHSIQIIK-VEVIKAAACRRPQVKQFHNSTIRFPL 504
E+RD + GAV Y DM ARHRAR SI+I+K VEV K RR VKQ N ++FPL
Sbjct: 92 EFRDTTRVGAVEAMYADMAARHRARFRSIRILKVVEVEKKEDVRRNYVKQLLNPHLKFPL 151
Query: 505 PKR---VHHYKRLNTFAYKRPSTYF 570
P R V FA RPST++
Sbjct: 152 PHRRTGVVGLAGKKVFAPHRPSTFY 176
>SPAC3A12.10 |rpl2001|rpl20-1, rpl20, yl17b, rpl18a-2|60S ribosomal
protein L20a|Schizosaccharomyces pombe|chr 1|||Manual
Length = 176
Score = 135 bits (326), Expect = 6e-33
Identities = 73/145 (50%), Positives = 87/145 (60%), Gaps = 4/145 (2%)
Frame = +1
Query: 148 NPIVAKSRFWYFLRQLKKFKKTTGEIVXXXXXXXXXXXXXXNFGIWLRYESRSGVHNMYR 327
N VAKSR+WYFL+ + K KK TGEIV FGIW+RY+SRSG HNMY+
Sbjct: 32 NESVAKSRYWYFLKMINKVKKATGEIVAINEISEPKPLKAKVFGIWIRYDSRSGTHNMYK 91
Query: 328 EYRDLSVXGAVTQCYRDMGARHRARAHSIQIIK-VEVIKAAACRRPQVKQFHNSTIRFPL 504
E+RD + GAV Y DM ARHRAR SI+I+K VEV K RR VKQ N ++FPL
Sbjct: 92 EFRDTTRVGAVEAMYADMAARHRARFRSIRILKVVEVEKKEDVRRNYVKQLLNPHLKFPL 151
Query: 505 PKR---VHHYKRLNTFAYKRPSTYF 570
P R V FA RPST++
Sbjct: 152 PHRRTGVVGLAGKKVFAPHRPSTFY 176
>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting
protein 3 homolog Bud6|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1385
Score = 27.9 bits (59), Expect = 1.3
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Frame = +2
Query: 161 PNLVSGIS*DNLRSSRRPLVKLSLLRKFQRK---APSRLRTLVSGYAMSL 301
P++V S D+ + SRRP + S RKF K PS ++L G SL
Sbjct: 302 PSIVRQDSHDSNKLSRRPTINTSFDRKFSPKLTRTPSLTKSLDPGTPTSL 351
>SPAC22E12.11c |set3||histone lysine methyltransferase
Set3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 859
Score = 26.2 bits (55), Expect = 4.0
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = +3
Query: 360 HSVL*RYGS*TQSPSSLNTDHQSGSNQGCCVSPSTGQTVPQQH 488
HS R G+ T + +L + + SN G + TG T+P H
Sbjct: 99 HSASPRQGNNTGANGALFSQSTNSSNSGSYRNSVTGATLPNAH 141
>SPBC1718.07c |zfs1|moc4|transcription factor Zfs1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 404
Score = 25.8 bits (54), Expect = 5.3
Identities = 16/48 (33%), Positives = 21/48 (43%)
Frame = -3
Query: 382 PYLYSTE*QLHXHSGHGIHGTCCVHPNETHSVARYQSS*S*WGFSLEF 239
P L S+ + HSG HG HP+ S+ S S SL+F
Sbjct: 125 PSLLSSNATSYLHSGSSPHGNTSNHPSPISSLESLPSRSSTGSGSLDF 172
>SPAC10F6.13c |||aspartate aminotransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 409
Score = 25.4 bits (53), Expect = 7.1
Identities = 9/23 (39%), Positives = 11/23 (47%)
Frame = -1
Query: 501 WESDGAVVELFDLWTATRSSLDY 433
WE G V+ + W A S DY
Sbjct: 145 WEKLGVTVDTYPYWDAKNRSFDY 167
>SPAC57A7.08 |pzh1||serine/threonine protein phosphatase
Pzh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 515
Score = 25.4 bits (53), Expect = 7.1
Identities = 16/51 (31%), Positives = 24/51 (47%)
Frame = +3
Query: 381 GS*TQSPSSLNTDHQSGSNQGCCVSPSTGQTVPQQHHQIPIAQTCAPLQET 533
G+ +QSP+S + SNQ +SPST + HH + +P T
Sbjct: 93 GNSSQSPTSPHP-----SNQPAMLSPSTAASQHHHHHSSSSSYAVSPTSPT 138
>SPAC11G7.06c |mug132||S. pombe specific UPF0300 family protein
3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 25.0 bits (52), Expect = 9.3
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -3
Query: 643 WDIKRNFIPFLHGFYCYVTY 584
+D+ RN PF HG +C V Y
Sbjct: 94 YDLVRN--PFTHGLFCVVFY 111
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,581,421
Number of Sequences: 5004
Number of extensions: 50300
Number of successful extensions: 132
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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