Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP03_F_C16
(645 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_07_0131 + 27898028-27898042,27898159-27898274,27898361-278984... 139 2e-33
01_06_0730 - 31552747-31553088,31553583-31553646,31553743-315538... 138 5e-33
01_06_0180 - 27260099-27260440,27261236-27261350,27261403-272615... 123 1e-28
12_01_0752 - 6798938-6799312,6799628-6799768,6800257-6800325,680... 32 0.45
02_05_1017 - 33521135-33522604,33522727-33522976,33523078-33524255 31 1.0
03_01_0219 + 1731267-1731728,1732148-1732235,1732330-1732417,173... 29 4.2
12_02_0133 - 14057469-14057497,14057516-14057581,14057770-140583... 28 7.3
02_04_0185 - 20748206-20748405,20749067-20749232,20749373-207494... 28 7.3
11_06_0007 - 19171122-19172036 27 9.7
09_03_0202 + 13469580-13469585,13469597-13470142 27 9.7
>05_07_0131 +
27898028-27898042,27898159-27898274,27898361-27898424,
27899450-27899791
Length = 178
Score = 139 bits (337), Expect = 2e-33
Identities = 67/143 (46%), Positives = 87/143 (60%), Gaps = 3/143 (2%)
Frame = +1
Query: 148 NPIVAKSRFWYFLRQLKKFKKTTGEIVXXXXXXXXXXXXXXNFGIWLRYESRSGVHNMYR 327
N + AKS+FWYFLR+LKK KK+ G+++ N+GIWLRY+SR+G HNMY+
Sbjct: 35 NEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIFERNPTTIKNYGIWLRYQSRTGYHNMYK 94
Query: 328 EYRDLSVXGAVTQCYRDMGARHRARAHSIQIIKVEVIKAAACRRPQVKQFHNSTIRFPL- 504
EYRD ++ GAV Q Y +M +RHR R IQIIK + C+R KQFHNS I+FPL
Sbjct: 95 EYRDTTLNGAVEQMYTEMASRHRVRFPCIQIIKTATVHFKLCKRDNTKQFHNSNIKFPLV 154
Query: 505 --PKRVHHYKRLNTFAYKRPSTY 567
R K TF RP+ +
Sbjct: 155 YRKVRPPTRKLKTTFKASRPNLF 177
>01_06_0730 -
31552747-31553088,31553583-31553646,31553743-31553858,
31553964-31553978
Length = 178
Score = 138 bits (333), Expect = 5e-33
Identities = 67/143 (46%), Positives = 86/143 (60%), Gaps = 3/143 (2%)
Frame = +1
Query: 148 NPIVAKSRFWYFLRQLKKFKKTTGEIVXXXXXXXXXXXXXXNFGIWLRYESRSGVHNMYR 327
N + AKS+FWYFLR+LKK KK+ G+I+ N+GIWLRY+SR+G HNMY+
Sbjct: 35 NEVRAKSKFWYFLRKLKKVKKSNGQILAINEIFEKNPTTIKNYGIWLRYQSRTGYHNMYK 94
Query: 328 EYRDLSVXGAVTQCYRDMGARHRARAHSIQIIKVEVIKAAACRRPQVKQFHNSTIRFPL- 504
EYRD ++ GAV Q Y +M +RHR R IQIIK + C+R KQFH S I+FPL
Sbjct: 95 EYRDTTLNGAVEQMYTEMASRHRVRFPCIQIIKTATVHFKLCKRDNTKQFHKSDIKFPLV 154
Query: 505 --PKRVHHYKRLNTFAYKRPSTY 567
R K TF RP+ +
Sbjct: 155 YRKVRPPTRKLKTTFKASRPNLF 177
>01_06_0180 -
27260099-27260440,27261236-27261350,27261403-27261518,
27261594-27261608
Length = 195
Score = 123 bits (297), Expect = 1e-28
Identities = 60/133 (45%), Positives = 79/133 (59%), Gaps = 3/133 (2%)
Frame = +1
Query: 178 YFLRQLKKFKKTTGEIVXXXXXXXXXXXXXXNFGIWLRYESRSGVHNMYREYRDLSVXGA 357
YFLR+LKK KK+ G+++ N+GIWLRY+SR+G HNMY+EYRD ++ GA
Sbjct: 62 YFLRKLKKVKKSNGQMLAINEIFERNPTTIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGA 121
Query: 358 VTQCYRDMGARHRARAHSIQIIKVEVIKAAACRRPQVKQFHNSTIRFPL---PKRVHHYK 528
V Q Y +M +RHR R IQIIK + C+R KQFHN +I+FPL R K
Sbjct: 122 VEQMYTEMASRHRVRFPCIQIIKTATVHFKLCKRDNTKQFHNGSIKFPLVYRKVRPPTRK 181
Query: 529 RLNTFAYKRPSTY 567
TF RP+ +
Sbjct: 182 LKTTFKASRPNLF 194
>12_01_0752 -
6798938-6799312,6799628-6799768,6800257-6800325,
6800407-6800454,6801740-6801836,6801922-6802001,
6802099-6802170,6802335-6802429,6802853-6802934,
6805476-6805853
Length = 478
Score = 31.9 bits (69), Expect = 0.45
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 4/41 (9%)
Frame = +3
Query: 411 NTDHQSGSNQGCC----VSPSTGQTVPQQHHQIPIAQTCAP 521
N H G N+G P+ QT P+QH Q+PI T P
Sbjct: 406 NNHHHQGGNRGGAHHVGTPPNQQQTKPEQHPQLPIGATKQP 446
>02_05_1017 - 33521135-33522604,33522727-33522976,33523078-33524255
Length = 965
Score = 30.7 bits (66), Expect = 1.0
Identities = 16/54 (29%), Positives = 27/54 (50%)
Frame = +2
Query: 467 SNSSTTAPSDSHCPNVCTTTRDLIPSRTRGLALTSCNCNVRHITIKPM*KWNKV 628
S++ TT+ S P++C+ D R R +S C H T +PM +W ++
Sbjct: 410 SSAMTTSAMQSRSPSLCSACLDGY-ERERADMASSPGCGALHATEQPMSQWLQI 462
>03_01_0219 +
1731267-1731728,1732148-1732235,1732330-1732417,
1732528-1732573,1732687-1732785,1734363-1734431,
1735706-1736036,1736123-1736256,1736400-1737251
Length = 722
Score = 28.7 bits (61), Expect = 4.2
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +3
Query: 396 SPSSLNTDHQSGSNQGCCVSPSTGQTVPQQHH 491
S + L T ++G+N C STGQT P Q H
Sbjct: 561 SATKLATKCENGANVSCDGVGSTGQTPPLQQH 592
>12_02_0133 - 14057469-14057497,14057516-14057581,14057770-14058363,
14058450-14058570,14058926-14059320,14059410-14059534,
14059646-14059876,14060012-14060484,14060587-14060693,
14060842-14061172,14061222-14061250,14061345-14061901,
14062170-14062255,14062344-14062406,14062646-14063001,
14063101-14063356
Length = 1272
Score = 27.9 bits (59), Expect = 7.3
Identities = 14/47 (29%), Positives = 21/47 (44%)
Frame = +3
Query: 393 QSPSSLNTDHQSGSNQGCCVSPSTGQTVPQQHHQIPIAQTCAPLQET 533
Q P S T++Q SN + Q + HHQ+PI + + T
Sbjct: 950 QCPQSTETNYQRCSNGETESNQPVSQNELEDHHQVPITASSSTNNST 996
>02_04_0185 -
20748206-20748405,20749067-20749232,20749373-20749471,
20749487-20749561,20749663-20749743,20750121-20750274,
20750330-20750425,20750518-20750727,20750746-20750957
Length = 430
Score = 27.9 bits (59), Expect = 7.3
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +1
Query: 478 HNSTIRFPLPKRVHHYKRLNTFAY 549
H+ +R PLP +HH TFAY
Sbjct: 221 HDPEVRDPLPLTIHHLPIAVTFAY 244
>11_06_0007 - 19171122-19172036
Length = 304
Score = 27.5 bits (58), Expect = 9.7
Identities = 9/23 (39%), Positives = 12/23 (52%)
Frame = -2
Query: 479 WNCLTCGRRHAAALITSTLMICI 411
W C CG R AA L+ +C+
Sbjct: 252 WGCKACGEREAAVLLLPCRHLCL 274
>09_03_0202 + 13469580-13469585,13469597-13470142
Length = 183
Score = 27.5 bits (58), Expect = 9.7
Identities = 16/52 (30%), Positives = 20/52 (38%), Gaps = 1/52 (1%)
Frame = +2
Query: 467 SNSSTTAPSDSHCPNVCTTTRDLIPSR-TRGLALTSCNCNVRHITIKPM*KW 619
S S P D H P DLIPS + + + C I +P KW
Sbjct: 75 SKQSNNNPHDVHVPQALELMDDLIPSNGNKRRSSKNIKCFTHWIECEPNDKW 126
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,371,580
Number of Sequences: 37544
Number of extensions: 321417
Number of successful extensions: 858
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 839
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 857
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -