Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_C16
         (645 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X75339-1|CAA53089.1|  177|Drosophila melanogaster ribosomal prot...   208   4e-54
AY071222-1|AAL48844.1|  177|Drosophila melanogaster RE26382p pro...   208   4e-54
AE013599-2503|AAF57838.1|  177|Drosophila melanogaster CG6510-PA...   208   4e-54
BT023059-1|AAY55475.1|  328|Drosophila melanogaster IP10969p pro...    31   1.8  

>X75339-1|CAA53089.1|  177|Drosophila melanogaster ribosomal protein
           L18a protein.
          Length = 177

 Score =  208 bits (509), Expect = 4e-54
 Identities = 98/139 (70%), Positives = 108/139 (77%)
 Frame = +1

Query: 154 IVAKSRFWYFLRQLKKFKKTTGEIVXXXXXXXXXXXXXXNFGIWLRYESRSGVHNMYREY 333
           IVAKSRFWYFLRQLKKFKKTTGEIV              NFGIWLRY+SRSG HNMYREY
Sbjct: 38  IVAKSRFWYFLRQLKKFKKTTGEIVSIKQVYETSPVKIKNFGIWLRYDSRSGTHNMYREY 97

Query: 334 RDLSVXGAVTQCYRDMGARHRARAHSIQIIKVEVIKAAACRRPQVKQFHNSTIRFPLPKR 513
           RDL+V GAVTQCYRDMGARHRARAHSIQIIKV+ I AA  RR  VKQFH+S I+FPL +R
Sbjct: 98  RDLTVGGAVTQCYRDMGARHRARAHSIQIIKVDSIPAAKTRRVHVKQFHDSKIKFPLVQR 157

Query: 514 VHHYKRLNTFAYKRPSTYF 570
           VHH      F++++P TYF
Sbjct: 158 VHHKGNRKLFSFRKPRTYF 176



 Score = 30.7 bits (66), Expect = 1.8
 Identities = 12/16 (75%), Positives = 15/16 (93%)
 Frame = +2

Query: 41 MKAKGQLREYEVIGRK 88
          M+AKG L+EYEV+GRK
Sbjct: 1  MRAKGLLKEYEVVGRK 16


>AY071222-1|AAL48844.1|  177|Drosophila melanogaster RE26382p
           protein.
          Length = 177

 Score =  208 bits (509), Expect = 4e-54
 Identities = 98/139 (70%), Positives = 108/139 (77%)
 Frame = +1

Query: 154 IVAKSRFWYFLRQLKKFKKTTGEIVXXXXXXXXXXXXXXNFGIWLRYESRSGVHNMYREY 333
           IVAKSRFWYFLRQLKKFKKTTGEIV              NFGIWLRY+SRSG HNMYREY
Sbjct: 38  IVAKSRFWYFLRQLKKFKKTTGEIVSIKQVYETSPVKIKNFGIWLRYDSRSGTHNMYREY 97

Query: 334 RDLSVXGAVTQCYRDMGARHRARAHSIQIIKVEVIKAAACRRPQVKQFHNSTIRFPLPKR 513
           RDL+V GAVTQCYRDMGARHRARAHSIQIIKV+ I AA  RR  VKQFH+S I+FPL +R
Sbjct: 98  RDLTVGGAVTQCYRDMGARHRARAHSIQIIKVDSIPAAKTRRVHVKQFHDSKIKFPLVQR 157

Query: 514 VHHYKRLNTFAYKRPSTYF 570
           VHH      F++++P TYF
Sbjct: 158 VHHKGNRKLFSFRKPRTYF 176



 Score = 30.7 bits (66), Expect = 1.8
 Identities = 12/16 (75%), Positives = 15/16 (93%)
 Frame = +2

Query: 41 MKAKGQLREYEVIGRK 88
          M+AKG L+EYEV+GRK
Sbjct: 1  MRAKGLLKEYEVVGRK 16


>AE013599-2503|AAF57838.1|  177|Drosophila melanogaster CG6510-PA
           protein.
          Length = 177

 Score =  208 bits (509), Expect = 4e-54
 Identities = 98/139 (70%), Positives = 108/139 (77%)
 Frame = +1

Query: 154 IVAKSRFWYFLRQLKKFKKTTGEIVXXXXXXXXXXXXXXNFGIWLRYESRSGVHNMYREY 333
           IVAKSRFWYFLRQLKKFKKTTGEIV              NFGIWLRY+SRSG HNMYREY
Sbjct: 38  IVAKSRFWYFLRQLKKFKKTTGEIVSIKQVYETSPVKIKNFGIWLRYDSRSGTHNMYREY 97

Query: 334 RDLSVXGAVTQCYRDMGARHRARAHSIQIIKVEVIKAAACRRPQVKQFHNSTIRFPLPKR 513
           RDL+V GAVTQCYRDMGARHRARAHSIQIIKV+ I AA  RR  VKQFH+S I+FPL +R
Sbjct: 98  RDLTVGGAVTQCYRDMGARHRARAHSIQIIKVDSIPAAKTRRVHVKQFHDSKIKFPLVQR 157

Query: 514 VHHYKRLNTFAYKRPSTYF 570
           VHH      F++++P TYF
Sbjct: 158 VHHKGNRKLFSFRKPRTYF 176



 Score = 30.7 bits (66), Expect = 1.8
 Identities = 12/16 (75%), Positives = 15/16 (93%)
 Frame = +2

Query: 41 MKAKGQLREYEVIGRK 88
          M+AKG L+EYEV+GRK
Sbjct: 1  MRAKGLLKEYEVVGRK 16


>BT023059-1|AAY55475.1|  328|Drosophila melanogaster IP10969p
          protein.
          Length = 328

 Score = 30.7 bits (66), Expect = 1.8
 Identities = 12/16 (75%), Positives = 15/16 (93%)
 Frame = +2

Query: 41 MKAKGQLREYEVIGRK 88
          M+AKG L+EYEV+GRK
Sbjct: 1  MRAKGLLKEYEVVGRK 16


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,483,668
Number of Sequences: 53049
Number of extensions: 556570
Number of successful extensions: 1749
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1627
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1749
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2724262200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)