Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_C16
         (645 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF038611-9|AAB92041.2|  180|Caenorhabditis elegans Ribosomal pro...   167   8e-42
Z92837-1|CAB07400.1| 1043|Caenorhabditis elegans Hypothetical pr...    30   1.2  
AY372076-1|AAQ75758.1| 1043|Caenorhabditis elegans SYM-4 protein.      30   1.2  
Z48717-10|CAA88612.2|  423|Caenorhabditis elegans Hypothetical p...    28   4.9  
Z48584-9|CAA88478.2|  423|Caenorhabditis elegans Hypothetical pr...    28   4.9  
AL021447-2|CAA16273.2|  807|Caenorhabditis elegans Hypothetical ...    28   6.5  

>AF038611-9|AAB92041.2|  180|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 20 protein.
          Length = 180

 Score =  167 bits (405), Expect = 8e-42
 Identities = 74/141 (52%), Positives = 97/141 (68%)
 Frame = +1

Query: 148 NPIVAKSRFWYFLRQLKKFKKTTGEIVXXXXXXXXXXXXXXNFGIWLRYESRSGVHNMYR 327
           N ++AKSRFWYF+  L++ KK  GEI+              N+G+WL+Y+SR+G HNMYR
Sbjct: 39  NHVIAKSRFWYFVSMLRRVKKANGEILSIKQVFEKNPGTVKNYGVWLKYDSRTGHHNMYR 98

Query: 328 EYRDLSVXGAVTQCYRDMGARHRARAHSIQIIKVEVIKAAACRRPQVKQFHNSTIRFPLP 507
           EYRD +V GAVTQCYRDMGARHRA+A  I I+KV+ +KA   +R  +K FH++ IRFPLP
Sbjct: 99  EYRDTTVAGAVTQCYRDMGARHRAQADRIHILKVQTVKAEDTKRAGIKMFHDAKIRFPLP 158

Query: 508 KRVHHYKRLNTFAYKRPSTYF 570
            RV   K L+ F   R +T+F
Sbjct: 159 HRVTKRKNLSVFTTARQNTHF 179


>Z92837-1|CAB07400.1| 1043|Caenorhabditis elegans Hypothetical
           protein R03E1.1 protein.
          Length = 1043

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 15/49 (30%), Positives = 23/49 (46%)
 Frame = +2

Query: 464 RSNSSTTAPSDSHCPNVCTTTRDLIPSRTRGLALTSCNCNVRHITIKPM 610
           R  SST  P+DS C  +  +TR   P  +R   ++     + H  + PM
Sbjct: 213 RHRSSTWTPTDSSCSGISPSTRVPPPIPSRAPVMSPVQSPLTHPPVAPM 261


>AY372076-1|AAQ75758.1| 1043|Caenorhabditis elegans SYM-4 protein.
          Length = 1043

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 15/49 (30%), Positives = 23/49 (46%)
 Frame = +2

Query: 464 RSNSSTTAPSDSHCPNVCTTTRDLIPSRTRGLALTSCNCNVRHITIKPM 610
           R  SST  P+DS C  +  +TR   P  +R   ++     + H  + PM
Sbjct: 213 RHRSSTWTPTDSSCSGISPSTRVPPPIPSRAPVMSPVQSPLTHPPVAPM 261


>Z48717-10|CAA88612.2|  423|Caenorhabditis elegans Hypothetical
           protein ZK1321.4 protein.
          Length = 423

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 16/43 (37%), Positives = 21/43 (48%)
 Frame = +3

Query: 393 QSPSSLNTDHQSGSNQGCCVSPSTGQTVPQQHHQIPIAQTCAP 521
           QS +  ++ HQS  N G      +G   P  HH IPI  + AP
Sbjct: 164 QSSTFHSSSHQSSGNYG------SGGFSPSSHHNIPIRHSPAP 200


>Z48584-9|CAA88478.2|  423|Caenorhabditis elegans Hypothetical
           protein ZK1321.4 protein.
          Length = 423

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 16/43 (37%), Positives = 21/43 (48%)
 Frame = +3

Query: 393 QSPSSLNTDHQSGSNQGCCVSPSTGQTVPQQHHQIPIAQTCAP 521
           QS +  ++ HQS  N G      +G   P  HH IPI  + AP
Sbjct: 164 QSSTFHSSSHQSSGNYG------SGGFSPSSHHNIPIRHSPAP 200


>AL021447-2|CAA16273.2|  807|Caenorhabditis elegans Hypothetical
           protein F19B2.6 protein.
          Length = 807

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 13/44 (29%), Positives = 20/44 (45%)
 Frame = +3

Query: 390 TQSPSSLNTDHQSGSNQGCCVSPSTGQTVPQQHHQIPIAQTCAP 521
           +Q  +S N D+ +G  +GCCV     +  P  +H       C P
Sbjct: 387 SQQGTSQNRDNLAGM-KGCCVKDQYHEPAPSGYHPPQAQSNCYP 429


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,193,681
Number of Sequences: 27780
Number of extensions: 281695
Number of successful extensions: 734
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 712
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 734
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1423653030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)