Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_C15
         (651 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPACUNK4.13c |||GTPase Ylf2 |Schizosaccharomyces pombe|chr 1|||M...    27   2.3  
SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase Vas1|Schizos...    26   5.4  
SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces...    26   5.4  
SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase ...    25   9.5  
SPCC645.08c |snd1||RNA-binding protein Snd1|Schizosaccharomyces ...    25   9.5  
SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces ...    25   9.5  

>SPACUNK4.13c |||GTPase Ylf2 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 407

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 22/103 (21%), Positives = 43/103 (41%), Gaps = 7/103 (6%)
 Frame = +1

Query: 352 RQSFQSKIQELNTIEEKQIALNMPRYYGWQCIMLNNDK-------VPYNAMPLVQYYTRS 510
           + SF  ++  L+ + E+Q+ +  P     +C  L  +          Y+A+ L+ Y+T S
Sbjct: 271 KNSFGDQVIPLSVLFEEQLFMLTPEEAAQECASLGKNSQLSEIICAGYSALNLIHYFTAS 330

Query: 511 HFIPVAKLPEAYNEIEQQASNILQEIKPQIEDAIAIELTDVER 639
             I  A      ++    A  I  + K +      I+ +D E+
Sbjct: 331 EKIVQAWTIADGSKAPDAAGIIHSDFKKKFVAGEVIKFSDFEK 373


>SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase
           Vas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 950

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 18/48 (37%), Positives = 29/48 (60%)
 Frame = -1

Query: 288 VFTFFKSRNSRVSWNGILYFQ**SV*FNYMHIELQFDIPINQNSY*VI 145
           +F F +S +SR + +G+L F+      NY+HIE  FDI   Q+ + +I
Sbjct: 1   MFHFQRSFSSRKA-HGLLSFKN----RNYIHIEAPFDIAAIQDGWNII 43


>SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 576

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = +1

Query: 340 LLRRRQSFQSKIQELNTIEEKQI-ALNMPRYYGWQCIMLNNDKVPYN 477
           L R+R +F  K+ ELN  +++++  LN+P   G+       DK  ++
Sbjct: 39  LRRKRSNFFPKLDELNGAQDEEMRGLNIPGGSGYLENRYGRDKFTFS 85


>SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase
           Cho2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 905

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 12/30 (40%), Positives = 14/30 (46%)
 Frame = +3

Query: 363 SKQNTRTKHDRRETNSLKYASLLWMAVYNV 452
           SK    TKH  R   S  YA   W  +YN+
Sbjct: 432 SKSKAWTKHFIRNGESAAYAWSQWKGLYNL 461


>SPCC645.08c |snd1||RNA-binding protein Snd1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 878

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +1

Query: 115 LGDIYIN*ETNNSIGILIYG 174
           LGDIY+N +TN ++ +L  G
Sbjct: 572 LGDIYVNHDTNFALKLLSQG 591


>SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 965

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = +3

Query: 345 ASKTKFSKQNTRTKHDRRETNSLKYA 422
           A++TKF K  T+T + +R + SLK A
Sbjct: 833 ATRTKFGKLCTKTHYRKRYSISLKNA 858


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,279,973
Number of Sequences: 5004
Number of extensions: 43350
Number of successful extensions: 128
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)