Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_C15
         (651 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1047 - 27133869-27134345,27134444-27134701,27134841-271350...    29   4.2  
10_05_0113 + 9280756-9283489,9283726-9284048,9284201-9284314           27   9.8  
07_03_0182 - 14815467-14815488,14815604-14815943,14816860-148172...    27   9.8  

>06_03_1047 -
           27133869-27134345,27134444-27134701,27134841-27135041,
           27135242-27135584,27135674-27135732,27136256-27136581,
           27136753-27136849,27137072-27137182,27137691-27138305,
           27139578-27139880
          Length = 929

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 16/47 (34%), Positives = 26/47 (55%)
 Frame = +1

Query: 478 AMPLVQYYTRSHFIPVAKLPEAYNEIEQQASNILQEIKPQIEDAIAI 618
           A  +V+Y    HF    KLP + + IEQ+  + L ++  Q+ED  A+
Sbjct: 626 AKAIVEYAFHFHFF--GKLPTSKDGIEQRKEDRLSQLLLQVEDFSAL 670


>10_05_0113 + 9280756-9283489,9283726-9284048,9284201-9284314
          Length = 1056

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
 Frame = +1

Query: 124 IYIN*ETNNSIGILIYGYIELQFDMHIIKLHRSLLK--IKNAIPRYSTITAL 273
           IYIN + NN  GIL      L  ++  I+L  + +   +   I RY+ +T+L
Sbjct: 359 IYINLQLNNLSGILPNTIANLSLELQSIRLGGNQISGILPKGIGRYAKLTSL 410


>07_03_0182 -
           14815467-14815488,14815604-14815943,14816860-14817220,
           14817232-14817666,14818042-14818149
          Length = 421

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +3

Query: 318 GYDSGRKIIAS-KTKFSKQNTRTKHDRRETNSLKYASL 428
           G D G+ I+ S K ++   + +  H R  TN LKY  L
Sbjct: 279 GTDKGKNILFSLKKRYLLAHLQAGHSRMATNILKYVDL 316


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,870,136
Number of Sequences: 37544
Number of extensions: 218622
Number of successful extensions: 466
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 457
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 466
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)