Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP03_F_C14
(451 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC685.07c |rpl2701|rpl27-1|60S ribosomal protein L27|Schizosac... 93 2e-20
SPCC74.05 |rpl2702|rpl27-2|60S ribosomal protein L27|Schizosacch... 87 2e-18
SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr... 30 0.14
SPAC144.08 |||DNAJ domain protein Jac1 |Schizosaccharomyces pomb... 28 0.76
SPAC1805.13 |rpl14||60S ribosomal protein L14|Schizosaccharomyce... 27 1.0
SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces p... 27 1.0
SPAC16A10.08c |mug74|SPAC589.01c|sequence orphan|Schizosaccharom... 27 1.3
SPCC11E10.06c |||RNA polymerase II elongator complex subunit Elp... 25 5.4
SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||... 25 5.4
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac... 25 5.4
SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces... 25 7.1
SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ... 25 7.1
SPAC26H5.02c |||DNA replication ATPase|Schizosaccharomyces pombe... 25 7.1
SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10 |... 24 9.4
SPAC23H4.17c |srb10|prk1, cdk8|cyclin-dependent protein kinase S... 24 9.4
SPAC1D4.03c |aut12||autophagy associated protein Aut12|Schizosac... 24 9.4
SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr... 24 9.4
>SPBC685.07c |rpl2701|rpl27-1|60S ribosomal protein
L27|Schizosaccharomyces pombe|chr 2|||Manual
Length = 136
Score = 92.7 bits (220), Expect = 2e-20
Identities = 43/87 (49%), Positives = 57/87 (65%), Gaps = 2/87 (2%)
Frame = +3
Query: 150 PGKVHKRMGKNKIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEK--FSAKDLKDPAKRKK 323
P KV K MG +I +RS++KPF+KVVNYNHLMPTRY ++ K +A K+P +R
Sbjct: 50 PLKVTKSMGAKRIARRSRVKPFIKVVNYNHLMPTRYALELDNLKGLITADTFKEPTQRSA 109
Query: 324 LRFNTRVRFEXRYKSGKNKWFFQKLRF 404
R + FE +Y+SGK+ WFF LRF
Sbjct: 110 ARKTVKKTFEEKYQSGKSAWFFTPLRF 136
Score = 41.1 bits (92), Expect = 8e-05
Identities = 15/35 (42%), Positives = 26/35 (74%)
Frame = +1
Query: 1 MGKXMKPGKVVLVLSGRYAGRKAIVVKNYDEGTSA 105
M K +KPGKV L+ GR+AG+K ++++ D+G+ +
Sbjct: 1 MVKILKPGKVALITRGRFAGKKVVILQAIDQGSKS 35
Score = 30.7 bits (66), Expect = 0.11
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +2
Query: 110 PYGHAFVAGIDRYPRQSAQEDG 175
P+GHA VAG++RYP + + G
Sbjct: 37 PFGHAVVAGVERYPLKVTKSMG 58
>SPCC74.05 |rpl2702|rpl27-2|60S ribosomal protein
L27|Schizosaccharomyces pombe|chr 3|||Manual
Length = 136
Score = 86.6 bits (205), Expect = 2e-18
Identities = 39/87 (44%), Positives = 56/87 (64%), Gaps = 2/87 (2%)
Frame = +3
Query: 150 PGKVHKRMGKNKIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEK--FSAKDLKDPAKRKK 323
P KV K MG +I KRS++KPF+KV+NYNHLMPTRY ++ K + +P++R
Sbjct: 50 PLKVTKSMGAKRIAKRSRVKPFIKVINYNHLMPTRYALELDNLKGLVTPTTFSEPSQRSA 109
Query: 324 LRFNTRVRFEXRYKSGKNKWFFQKLRF 404
+ + FE +Y++GK+ WFF LRF
Sbjct: 110 AKKTVKNTFEEKYQTGKSAWFFTPLRF 136
Score = 44.8 bits (101), Expect = 6e-06
Identities = 17/35 (48%), Positives = 27/35 (77%)
Frame = +1
Query: 1 MGKXMKPGKVVLVLSGRYAGRKAIVVKNYDEGTSA 105
M K +KPGKV LV GR+AG+K ++++N D+G+ +
Sbjct: 1 MVKILKPGKVALVTRGRFAGKKVVILQNVDQGSKS 35
Score = 30.7 bits (66), Expect = 0.11
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +2
Query: 110 PYGHAFVAGIDRYPRQSAQEDG 175
P+GHA VAG++RYP + + G
Sbjct: 37 PFGHAVVAGVERYPLKVTKSMG 58
>SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1024
Score = 30.3 bits (65), Expect = 0.14
Identities = 20/75 (26%), Positives = 30/75 (40%)
Frame = -3
Query: 359 PLFKTYSRVETQLLTLSRVFQVFCAEFFKTEVNCITCWHQVIVVYNLDERLYLGPLVDFI 180
P+++ + + T S + CA+F E N + WH YNL R Y + D +
Sbjct: 749 PVYEDWHLLIFNASTSSMMKTWLCAKFSLKETNKTSFWHS---SYNLFNRQYHVDMPDNV 805
Query: 179 LSHPLVHFAGGTCRY 135
P G C Y
Sbjct: 806 SDLPQTRLCYGACVY 820
>SPAC144.08 |||DNAJ domain protein Jac1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 225
Score = 27.9 bits (59), Expect = 0.76
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = +3
Query: 174 GKNKIHKRSKIKPFVKVVNYNHLMPTRYTVDF-SFEKFSAKDLKDP 308
G + I R K P K+VNYNH + + +F K D+ DP
Sbjct: 28 GNHWIFARFKFYPLNKIVNYNHFHSSSCQSEAKNFYKQFEGDISDP 73
>SPAC1805.13 |rpl14||60S ribosomal protein L14|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 134
Score = 27.5 bits (58), Expect = 1.0
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +1
Query: 7 KXMKPGKVVLVLSGRYAGRKAIVVKNYD 90
+ ++ G+VVLV G Y G+ A++V D
Sbjct: 6 RYVEVGRVVLVTKGEYTGKLAVIVDIVD 33
>SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 195
Score = 27.5 bits (58), Expect = 1.0
Identities = 8/27 (29%), Positives = 19/27 (70%)
Frame = +1
Query: 13 MKPGKVVLVLSGRYAGRKAIVVKNYDE 93
+ PG V ++L+GR+ G++ +V+ ++
Sbjct: 52 LAPGTVCILLAGRFRGKRVVVLSQLED 78
>SPAC16A10.08c |mug74|SPAC589.01c|sequence
orphan|Schizosaccharomyces pombe|chr 1|||Manual
Length = 285
Score = 27.1 bits (57), Expect = 1.3
Identities = 13/31 (41%), Positives = 21/31 (67%)
Frame = +3
Query: 117 GMPSSLVSTGTPGKVHKRMGKNKIHKRSKIK 209
G P+SLVS+ T K+H +G+ I K S+++
Sbjct: 184 GSPTSLVSSNTASKLH--LGRKDIVKLSELR 212
>SPCC11E10.06c |||RNA polymerase II elongator complex subunit Elp4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 361
Score = 25.0 bits (52), Expect = 5.4
Identities = 18/61 (29%), Positives = 25/61 (40%), Gaps = 3/61 (4%)
Frame = +3
Query: 153 GKVHKRMGKNKIHKRSKIKPFVKVVNYNHLMPTRYTVD---FSFEKFSAKDLKDPAKRKK 323
G V + +G +IHK PF N N +TV F+ E + L D K K
Sbjct: 286 GLVTQPLGLFRIHKLPLALPFTNHANSNEAGDLSFTVSKRRFTIEPWVLPPLDDEQKDTK 345
Query: 324 L 326
+
Sbjct: 346 I 346
>SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1260
Score = 25.0 bits (52), Expect = 5.4
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +3
Query: 156 KVHKRMGKNKIHKRSKIKPFVKVV 227
K+ KR+G I SK+ P VK+V
Sbjct: 205 KIAKRIGFTDISLSSKLTPMVKIV 228
>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
Smc6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1140
Score = 25.0 bits (52), Expect = 5.4
Identities = 10/36 (27%), Positives = 18/36 (50%)
Frame = -3
Query: 278 FKTEVNCITCWHQVIVVYNLDERLYLGPLVDFILSH 171
F V I C H V + + ++ GP ++F++ H
Sbjct: 90 FDNRVGVIECIHLVNFMCHDSLKINFGPRINFVIGH 125
>SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 565
Score = 24.6 bits (51), Expect = 7.1
Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Frame = -3
Query: 140 RYQRRRHARTACAEVPSS*FLTTIALRPA--YRPLKTSTTLP 21
RYQRR + C+ PSS +T + P PL T P
Sbjct: 384 RYQRRSRPVSPCSTAPSSPTFSTRSFSPTPDVTPLVTPAHSP 425
>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1337
Score = 24.6 bits (51), Expect = 7.1
Identities = 11/39 (28%), Positives = 19/39 (48%)
Frame = +3
Query: 261 VDFSFEKFSAKDLKDPAKRKKLRFNTRVRFEXRYKSGKN 377
+ F K L DP+ R+K F ++ + +Y+ KN
Sbjct: 150 LQFQIPSNEKKSLDDPSPRRKPSFFSKSNLKRKYRYLKN 188
>SPAC26H5.02c |||DNA replication ATPase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 504
Score = 24.6 bits (51), Expect = 7.1
Identities = 14/46 (30%), Positives = 19/46 (41%)
Frame = +3
Query: 204 IKPFVKVVNYNHLMPTRYTVDFSFEKFSAKDLKDPAKRKKLRFNTR 341
+ PF K Y H + T + S KF + K K R +TR
Sbjct: 39 VSPFFKKERYKHHLETNVSSHQSATKFIEPEPSPTKKTKLTRRDTR 84
>SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 791
Score = 24.2 bits (50), Expect = 9.4
Identities = 10/28 (35%), Positives = 14/28 (50%)
Frame = -3
Query: 101 EVPSS*FLTTIALRPAYRPLKTSTTLPG 18
E+P + F T+ AY P S T+ G
Sbjct: 691 EIPYNKFFKTVEKNEAYNPSSKSATIDG 718
>SPAC23H4.17c |srb10|prk1, cdk8|cyclin-dependent protein kinase
Srb10 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 352
Score = 24.2 bits (50), Expect = 9.4
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +3
Query: 135 VSTGTPGKVHKRMGKNKIHKR 197
+S+GT GKV+K + N KR
Sbjct: 11 ISSGTYGKVYKAVSSNSNDKR 31
>SPAC1D4.03c |aut12||autophagy associated protein
Aut12|Schizosaccharomyces pombe|chr 1|||Manual
Length = 513
Score = 24.2 bits (50), Expect = 9.4
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +3
Query: 309 AKRKKLRFNTRVRFEXRYKSGKNKWFFQKL 398
AK +L N+R F+ R G N+ F ++L
Sbjct: 208 AKAMQLTLNSRPNFDLRRLIGSNEQFLKEL 237
>SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 872
Score = 24.2 bits (50), Expect = 9.4
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -3
Query: 305 VFQVFCAEFFKTEVNCITCWHQVIVVYNLDERLY 204
V+QVFC F + I +Q++ V NL E Y
Sbjct: 315 VYQVFCTNFPNAQQLIIDNQNQLLKVANLLEPSY 348
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,730,158
Number of Sequences: 5004
Number of extensions: 34078
Number of successful extensions: 125
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 166231220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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