Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP03_F_C14
(451 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U89308-1|AAB48626.1| 136|Caenorhabditis elegans ribosomal prote... 109 7e-25
AF003143-5|AAK68266.1| 136|Caenorhabditis elegans Ribosomal pro... 109 7e-25
Z81540-2|CAB04403.1| 190|Caenorhabditis elegans Hypothetical pr... 31 0.29
U00036-4|AAK29850.1| 217|Caenorhabditis elegans Ribosomal prote... 29 1.2
U28991-12|AAA68386.2| 550|Caenorhabditis elegans Hypothetical p... 28 3.6
U23177-9|AAA64327.1| 217|Caenorhabditis elegans Hypothetical pr... 28 3.6
Z81043-1|CAB02799.1| 755|Caenorhabditis elegans Hypothetical pr... 27 6.3
AF000263-3|AAL77185.1| 697|Caenorhabditis elegans Hypothetical ... 27 6.3
AF000263-2|AAK21464.1| 755|Caenorhabditis elegans Hypothetical ... 27 6.3
AF000263-1|AAK21462.1| 781|Caenorhabditis elegans Hypothetical ... 27 6.3
L10986-11|AAK93846.2| 203|Caenorhabditis elegans Hypothetical p... 27 8.3
AF022969-4|AAB69889.1| 202|Caenorhabditis elegans Hypothetical ... 27 8.3
>U89308-1|AAB48626.1| 136|Caenorhabditis elegans ribosomal protein
L27 homolog protein.
Length = 136
Score = 109 bits (263), Expect = 7e-25
Identities = 50/87 (57%), Positives = 66/87 (75%), Gaps = 2/87 (2%)
Frame = +3
Query: 150 PGKVHKRMGKNKIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEK--FSAKDLKDPAKRKK 323
P KV K MGK KI KR+K+KPF+KVV+Y HL+PTRY+VD +F+K + + LK P+K++K
Sbjct: 50 PLKVTKDMGKKKIEKRNKLKPFLKVVSYTHLLPTRYSVDVAFDKTNINKEALKAPSKKRK 109
Query: 324 LRFNTRVRFEXRYKSGKNKWFFQKLRF 404
+ +FE RYK+GKNKWFF KLRF
Sbjct: 110 ALVEVKSKFEERYKTGKNKWFFTKLRF 136
Score = 59.3 bits (137), Expect = 1e-09
Identities = 27/34 (79%), Positives = 29/34 (85%)
Frame = +1
Query: 1 MGKXMKPGKVVLVLSGRYAGRKAIVVKNYDEGTS 102
MGK MKPGKVVLVL G+YAGRKA+VVK DEG S
Sbjct: 1 MGKIMKPGKVVLVLRGKYAGRKAVVVKQQDEGVS 34
Score = 31.9 bits (69), Expect = 0.22
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +2
Query: 107 KPYGHAFVAGIDRYPRQSAQEDGKE 181
+ Y HA +AGIDRYP + ++ GK+
Sbjct: 36 RTYPHAIIAGIDRYPLKVTKDMGKK 60
>AF003143-5|AAK68266.1| 136|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 27 protein.
Length = 136
Score = 109 bits (263), Expect = 7e-25
Identities = 50/87 (57%), Positives = 66/87 (75%), Gaps = 2/87 (2%)
Frame = +3
Query: 150 PGKVHKRMGKNKIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEK--FSAKDLKDPAKRKK 323
P KV K MGK KI KR+K+KPF+KVV+Y HL+PTRY+VD +F+K + + LK P+K++K
Sbjct: 50 PLKVTKDMGKKKIEKRNKLKPFLKVVSYTHLLPTRYSVDVAFDKTNINKEALKAPSKKRK 109
Query: 324 LRFNTRVRFEXRYKSGKNKWFFQKLRF 404
+ +FE RYK+GKNKWFF KLRF
Sbjct: 110 ALVEVKSKFEERYKTGKNKWFFTKLRF 136
Score = 59.3 bits (137), Expect = 1e-09
Identities = 27/34 (79%), Positives = 29/34 (85%)
Frame = +1
Query: 1 MGKXMKPGKVVLVLSGRYAGRKAIVVKNYDEGTS 102
MGK MKPGKVVLVL G+YAGRKA+VVK DEG S
Sbjct: 1 MGKIMKPGKVVLVLRGKYAGRKAVVVKQQDEGVS 34
Score = 31.9 bits (69), Expect = 0.22
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +2
Query: 107 KPYGHAFVAGIDRYPRQSAQEDGKE 181
+ Y HA +AGIDRYP + ++ GK+
Sbjct: 36 RTYPHAIIAGIDRYPLKVTKDMGKK 60
>Z81540-2|CAB04403.1| 190|Caenorhabditis elegans Hypothetical
protein F46B3.2 protein.
Length = 190
Score = 31.5 bits (68), Expect = 0.29
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Frame = -2
Query: 258 YNVLASSDCSLQP*RKALS-WTSCGFY-SFPSSCALCRGYLSIPAT 127
Y + C++ P + W +C F+ + P SC LC G ++ PAT
Sbjct: 92 YQKICPKTCNVCPPAICVDQWDNCPFFKNCPLSCGLCTGNVTTPAT 137
>U00036-4|AAK29850.1| 217|Caenorhabditis elegans Ribosomal protein,
large subunitprotein 6 protein.
Length = 217
Score = 29.5 bits (63), Expect = 1.2
Identities = 10/25 (40%), Positives = 19/25 (76%)
Frame = +1
Query: 7 KXMKPGKVVLVLSGRYAGRKAIVVK 81
K + PG V++VL+GR+ G++ + +K
Sbjct: 69 KTLTPGTVLIVLAGRHKGKRVVFLK 93
>U28991-12|AAA68386.2| 550|Caenorhabditis elegans Hypothetical
protein F08F8.2 protein.
Length = 550
Score = 27.9 bits (59), Expect = 3.6
Identities = 14/36 (38%), Positives = 15/36 (41%)
Frame = +1
Query: 19 PGKVVLVLSGRYAGRKAIVVKNYDEGTSAQAVRACL 126
P VL LSG K KN+ EG V CL
Sbjct: 307 PEMTVLALSGNLCVDKKAAAKNWTEGRGRSVVAECL 342
>U23177-9|AAA64327.1| 217|Caenorhabditis elegans Hypothetical
protein C56G2.15 protein.
Length = 217
Score = 27.9 bits (59), Expect = 3.6
Identities = 17/50 (34%), Positives = 22/50 (44%)
Frame = -3
Query: 170 PLVHFAGGTCRYQRRRHARTACAEVPSS*FLTTIALRPAYRPLKTSTTLP 21
P+VH TC + H + A A PS FL+ IA A + S P
Sbjct: 133 PIVHSTTATCIFPAMNHFQNAAASNPS--FLSKIAQPSASSTVSASAPPP 180
>Z81043-1|CAB02799.1| 755|Caenorhabditis elegans Hypothetical
protein C29F3.1 protein.
Length = 755
Score = 27.1 bits (57), Expect = 6.3
Identities = 16/43 (37%), Positives = 22/43 (51%)
Frame = +3
Query: 153 GKVHKRMGKNKIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEK 281
G+ H N+ KR KI + YNHL+P T+D+S K
Sbjct: 391 GQNHVATHLNRQLKRQKISKLEREKIYNHLVP---TIDYSAMK 430
>AF000263-3|AAL77185.1| 697|Caenorhabditis elegans Hypothetical
protein T08B2.7c protein.
Length = 697
Score = 27.1 bits (57), Expect = 6.3
Identities = 16/34 (47%), Positives = 19/34 (55%)
Frame = +3
Query: 180 NKIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEK 281
NK KR KI K YNHL+P T+D+S K
Sbjct: 426 NKQVKRRKINKLEKERIYNHLVP---TIDYSAMK 456
>AF000263-2|AAK21464.1| 755|Caenorhabditis elegans Hypothetical
protein T08B2.7b protein.
Length = 755
Score = 27.1 bits (57), Expect = 6.3
Identities = 16/34 (47%), Positives = 19/34 (55%)
Frame = +3
Query: 180 NKIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEK 281
NK KR KI K YNHL+P T+D+S K
Sbjct: 400 NKQVKRRKINKLEKERIYNHLVP---TIDYSAMK 430
>AF000263-1|AAK21462.1| 781|Caenorhabditis elegans Hypothetical
protein T08B2.7a protein.
Length = 781
Score = 27.1 bits (57), Expect = 6.3
Identities = 16/34 (47%), Positives = 19/34 (55%)
Frame = +3
Query: 180 NKIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEK 281
NK KR KI K YNHL+P T+D+S K
Sbjct: 426 NKQVKRRKINKLEKERIYNHLVP---TIDYSAMK 456
>L10986-11|AAK93846.2| 203|Caenorhabditis elegans Hypothetical
protein F10E9.10 protein.
Length = 203
Score = 26.6 bits (56), Expect = 8.3
Identities = 14/43 (32%), Positives = 19/43 (44%)
Frame = -2
Query: 210 ALSWTSCGFYSFPSSCALCRGYLSIPATKACPYGLCGGTFVVI 82
+ SW Y SSC L ++ +P+ C L GG VI
Sbjct: 76 SFSWLIIAIYYSSSSCVLTFNFMEMPSAVLC--SLLGGISSVI 116
>AF022969-4|AAB69889.1| 202|Caenorhabditis elegans Hypothetical
protein C29G2.6 protein.
Length = 202
Score = 26.6 bits (56), Expect = 8.3
Identities = 9/28 (32%), Positives = 14/28 (50%)
Frame = -2
Query: 192 CGFYSFPSSCALCRGYLSIPATKACPYG 109
C F+ F SC C G+++ + C G
Sbjct: 135 CAFHCFDGSCPKCSGFITRVFNQMCAAG 162
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,583,806
Number of Sequences: 27780
Number of extensions: 197294
Number of successful extensions: 616
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 596
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 614
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 788595652
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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