Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_C13
         (653 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    75   7e-16
EF592538-1|ABQ95984.1|  582|Tribolium castaneum beta-N-acetylglu...    25   0.54 
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       24   1.3  
AM292334-1|CAL23146.2|  390|Tribolium castaneum gustatory recept...    21   6.7  
AM292333-1|CAL23145.2|  316|Tribolium castaneum gustatory recept...    21   6.7  
AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    21   6.7  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    21   6.7  
AY321476-2|AAQ23387.1|  257|Tribolium castaneum Ase protein.           21   8.9  

>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 74.5 bits (175), Expect = 7e-16
 Identities = 43/132 (32%), Positives = 73/132 (55%), Gaps = 9/132 (6%)
 Frame = +1

Query: 124 EANXIRKMTSSEVSSNXKILSEDLSNVEFDTSEDVEVIPTFDSMGLRDELLRGIYTYGFE 303
           E   +  + +S +++    +  D   V+   ++    I +F++ GLR  LL  +   G+ 
Sbjct: 120 EVENVEDLFTSGITTGVNFMKLDEIEVKVTGNDAPPPITSFETSGLRPHLLENVKKSGYT 179

Query: 304 KPSAIQQRSILPIVKGRDVIAQAQSGTGKTATFSISILQTL---------DTTLRETQVL 456
           KP+AIQ+ +I  I+ GRD+++ AQ+G+GKTA F + I+  L         +    +  V+
Sbjct: 180 KPTAIQKYAIPVILSGRDLMSCAQTGSGKTAAFMLPIIHNLLSDKNPPNTENNCAQPVVV 239

Query: 457 ILSPTRELATQI 492
           I+SPTRELA QI
Sbjct: 240 IMSPTRELAIQI 251



 Score = 28.3 bits (60), Expect = 0.058
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +2

Query: 527 TFNVMLVLGGTNLGXDIRKLDYGQHVVSGTPGXVFDMIRR 646
           T  V ++ GGT+      ++  G H++  TPG + D + R
Sbjct: 263 TVKVAVIYGGTSTNHQRGRILGGCHILVATPGRLKDFVNR 302


>EF592538-1|ABQ95984.1|  582|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG3 protein.
          Length = 582

 Score = 25.0 bits (52), Expect = 0.54
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +2

Query: 38  FPKFPFTNLXIQILRGFHPI 97
           +PKFP+  + I   R F P+
Sbjct: 213 YPKFPYRGVMIDTARNFFPV 232


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -2

Query: 313 LKVFRNHMCIFLAITHLEVPWSQKWV*LR 227
           +K F+   C F+AIT LE  W+   V +R
Sbjct: 199 IKTFKCKQCDFVAITKLE-QWNHSKVHIR 226


>AM292334-1|CAL23146.2|  390|Tribolium castaneum gustatory receptor
           candidate 13 protein.
          Length = 390

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +2

Query: 401 SQFQYYRL*TRLCVKLKYLFF 463
           S F+Y++    L ++L YL+F
Sbjct: 204 SNFEYFQRKILLMIQLYYLYF 224


>AM292333-1|CAL23145.2|  316|Tribolium castaneum gustatory receptor
           candidate 12 protein.
          Length = 316

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +2

Query: 401 SQFQYYRL*TRLCVKLKYLFF 463
           S F+Y++    L ++L YL+F
Sbjct: 130 SNFEYFQRKILLMIQLYYLYF 150


>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = +1

Query: 169 NXKILSEDLSNVEFDTSEDVEVIPTFDSMGLRDELL 276
           N   + E  + + F   + V  IP F  + L D+LL
Sbjct: 195 NPSAICESAAQLLFMNVQWVRSIPAFTCLPLSDQLL 230


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = +1

Query: 169 NXKILSEDLSNVEFDTSEDVEVIPTFDSMGLRDELL 276
           N   + E  + + F   + V  IP F  + L D+LL
Sbjct: 195 NPSAICESAAQLIFMNVQWVRSIPAFTCLPLSDQLL 230


>AY321476-2|AAQ23387.1|  257|Tribolium castaneum Ase protein.
          Length = 257

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 8/27 (29%), Positives = 14/27 (51%)
 Frame = -2

Query: 232 LRHLHSCRTQHSTNLPTIFXYWTILQT 152
           L++ +    QH TN+  +  +W   QT
Sbjct: 225 LKNENELPQQHKTNVMDVMQWWEQQQT 251


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,258
Number of Sequences: 336
Number of extensions: 2701
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16865010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)