Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP03_F_C13
(653 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 181 7e-47
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 174 1e-44
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 96 5e-21
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 92 7e-20
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 86 4e-18
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 80 3e-16
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 79 6e-16
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 74 2e-14
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 70 3e-13
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 69 8e-13
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 65 1e-11
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 61 2e-10
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 59 6e-10
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 57 2e-09
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 56 4e-09
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 56 4e-09
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 54 1e-08
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 54 2e-08
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 53 4e-08
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 44 2e-05
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 41 2e-04
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 40 2e-04
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos... 37 0.003
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch... 27 2.4
SPAPB24D3.01 ||SPAPB2C8.02|transcription factor |Schizosaccharom... 27 3.1
SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyce... 27 3.1
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch... 26 4.1
SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6 family|Schi... 26 4.1
SPBC1773.12 |||transcription factor |Schizosaccharomyces pombe|c... 26 5.5
SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein k... 26 5.5
SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3 |Schi... 26 5.5
SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity fac... 25 9.5
SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharom... 25 9.5
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 181 bits (441), Expect = 7e-47
Identities = 84/122 (68%), Positives = 101/122 (82%)
Frame = +1
Query: 187 EDLSNVEFDTSEDVEVIPTFDSMGLRDELLRGIYTYGFEKPSAIQQRSILPIVKGRDVIA 366
E + NVE TSEDV + +F+ M L+++LLRGIY YG+E PSA+Q R+I+ I KGRDVIA
Sbjct: 4 EIMENVELTTSEDVNAVSSFEEMNLKEDLLRGIYAYGYETPSAVQSRAIIQICKGRDVIA 63
Query: 367 QAQSGTGKTATFSISILQTLDTTLRETQVLILSPTRELATQIXKVILALGDFMNVQCHAC 546
QAQSGTGKTATFSI ILQ++D ++R+TQ LILSPTRELA QI V+LALGD MNVQCHAC
Sbjct: 64 QAQSGTGKTATFSIGILQSIDLSVRDTQALILSPTRELAVQIQNVVLALGDHMNVQCHAC 123
Query: 547 IG 552
IG
Sbjct: 124 IG 125
Score = 62.9 bits (146), Expect = 4e-11
Identities = 27/34 (79%), Positives = 31/34 (91%)
Frame = +2
Query: 548 LGGTNLGXDIRKLDYGQHVVSGTPGXVFDMIRRR 649
+GGT++G DI+KLDYGQHVVSGTPG V DMIRRR
Sbjct: 124 IGGTSVGNDIKKLDYGQHVVSGTPGRVTDMIRRR 157
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 174 bits (423), Expect = 1e-44
Identities = 83/122 (68%), Positives = 102/122 (83%)
Frame = +1
Query: 187 EDLSNVEFDTSEDVEVIPTFDSMGLRDELLRGIYTYGFEKPSAIQQRSILPIVKGRDVIA 366
+ L + +T+ D EVI TFD M L+ ELLRGIY YGFE+PSAIQQR+I+PI+ RDV+A
Sbjct: 3 DQLEDSVIETNYD-EVIDTFDDMNLKPELLRGIYAYGFERPSAIQQRAIMPILGERDVLA 61
Query: 367 QAQSGTGKTATFSISILQTLDTTLRETQVLILSPTRELATQIXKVILALGDFMNVQCHAC 546
QAQSGTGKTATFSIS+LQ +DT+L++ Q LIL+PTRELA QI KV++ALGD MNV+CHAC
Sbjct: 62 QAQSGTGKTATFSISVLQKIDTSLKQCQALILAPTRELAQQIQKVVVALGDLMNVECHAC 121
Query: 547 IG 552
IG
Sbjct: 122 IG 123
Score = 40.7 bits (91), Expect = 2e-04
Identities = 19/34 (55%), Positives = 23/34 (67%)
Frame = +2
Query: 548 LGGTNLGXDIRKLDYGQHVVSGTPGXVFDMIRRR 649
+GGT + D+ L G HVV GTPG V DMI+RR
Sbjct: 122 IGGTLVRDDMAALQAGVHVVVGTPGRVHDMIQRR 155
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 95.9 bits (228), Expect = 5e-21
Identities = 50/103 (48%), Positives = 66/103 (64%)
Frame = +1
Query: 244 FDSMGLRDELLRGIYTYGFEKPSAIQQRSILPIVKGRDVIAQAQSGTGKTATFSISILQT 423
F+ L+ ELL GI+ GFE+PS IQ+ SI + GRD++A+A++GTGKTA F I L+
Sbjct: 46 FEDYYLKRELLMGIFEAGFERPSPIQEESIPIALSGRDILARAKNGTGKTAAFVIPSLEK 105
Query: 424 LDTTLRETQVLILSPTRELATQIXKVILALGDFMNVQCHACIG 552
+DT + Q LIL PTRELA Q +V LG MNV+ G
Sbjct: 106 VDTKKSKIQTLILVPTRELALQTSQVCKTLGKHMNVKVMVTTG 148
Score = 37.5 bits (83), Expect = 0.002
Identities = 18/39 (46%), Positives = 24/39 (61%)
Frame = +2
Query: 536 VMLVLGGTNLGXDIRKLDYGQHVVSGTPGXVFDMIRRRV 652
VM+ GGT L DI +L+ H+V GTPG V D+ + V
Sbjct: 143 VMVTTGGTTLRDDIIRLNDTVHIVVGTPGRVLDLAGKGV 181
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 91.9 bits (218), Expect = 7e-20
Identities = 44/129 (34%), Positives = 84/129 (65%), Gaps = 2/129 (1%)
Frame = +1
Query: 154 SEVSSNXKILSEDLSNVEFDTSEDVEVIPTFDSMGLRDELLRGIYTYGFEKPSAIQQRSI 333
S + N + L++++ D + + + +F+ + L+ ELL+GIY+ F+KPS IQ++++
Sbjct: 86 SNLIPNKNEVRVKLADLQADPNSPLFSVKSFEELELKPELLKGIYSMKFQKPSKIQEKAL 145
Query: 334 LPIVKG--RDVIAQAQSGTGKTATFSISILQTLDTTLRETQVLILSPTRELATQIXKVIL 507
++ R++I Q+QSGTGKTA F++++L +D ++ + Q + L+P+RELA QI V+
Sbjct: 146 PLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICLAPSRELARQIMDVVT 205
Query: 508 ALGDFMNVQ 534
+G + V+
Sbjct: 206 EMGKYTEVK 214
Score = 25.4 bits (53), Expect = 7.2
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = +2
Query: 602 VVSGTPGXVFDMIRRR 649
+V GTPG V D+++RR
Sbjct: 233 IVIGTPGTVMDLMKRR 248
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 86.2 bits (204), Expect = 4e-18
Identities = 45/105 (42%), Positives = 68/105 (64%), Gaps = 2/105 (1%)
Frame = +1
Query: 244 FDSMGLRDELLRGIYTYGFEKPSAIQQRSILPIVKGRDVIAQAQSGTGKTATFSISILQT 423
F SMGL LLR I+ GF+ P+ IQ+++I +++GRDV+ A++G+GKTA F I +++
Sbjct: 71 FQSMGLNQTLLRAIFKKGFKAPTPIQRKTIPLLLEGRDVVGMARTGSGKTAAFVIPMIEH 130
Query: 424 LDTTL--RETQVLILSPTRELATQIXKVILALGDFMNVQCHACIG 552
L +TL T+ LILSP RELA Q KV+ +++ A +G
Sbjct: 131 LKSTLANSNTRALILSPNRELALQTVKVVKDFSKGTDLRSVAIVG 175
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 79.8 bits (188), Expect = 3e-16
Identities = 45/123 (36%), Positives = 68/123 (55%)
Frame = +1
Query: 184 SEDLSNVEFDTSEDVEVIPTFDSMGLRDELLRGIYTYGFEKPSAIQQRSILPIVKGRDVI 363
SE S S++ E TF +G+ DEL GF+ P+ IQQ +I ++ RDVI
Sbjct: 28 SEKSSENNNGDSQNNEAPKTFKELGVIDELCEACEKLGFKTPTPIQQEAIPVVLNKRDVI 87
Query: 364 AQAQSGTGKTATFSISILQTLDTTLRETQVLILSPTRELATQIXKVILALGDFMNVQCHA 543
AQ+G+GKTA F++ ++Q L ++L+PTRELA QI + A+G + V+
Sbjct: 88 GLAQTGSGKTAAFALPVIQELWNNPSPFFAVVLAPTRELAYQISEQFEAIGGSIGVRSVV 147
Query: 544 CIG 552
+G
Sbjct: 148 IVG 150
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 79.0 bits (186), Expect = 6e-16
Identities = 42/107 (39%), Positives = 62/107 (57%), Gaps = 3/107 (2%)
Frame = +1
Query: 241 TFDSMGLRDELLRGIYTYGFEKPSAIQQRSILPIVKGRDVIAQAQSGTGKTATFSISILQ 420
+F SM L +L+G+ GFE P+ IQ ++I + G+D++ A +G+GKTA F + IL+
Sbjct: 260 SFQSMNLSRPILKGLSNLGFEVPTQIQDKTIPLALLGKDIVGAAVTGSGKTAAFIVPILE 319
Query: 421 TL---DTTLRETQVLILSPTRELATQIXKVILALGDFMNVQCHACIG 552
L + T+VLIL PTRELA Q V + F ++ CIG
Sbjct: 320 RLLYRPKKVPTTRVLILCPTRELAMQCHSVATKIASFTDIMVCLCIG 366
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 73.7 bits (173), Expect = 2e-14
Identities = 40/78 (51%), Positives = 49/78 (62%)
Frame = +1
Query: 259 LRDELLRGIYTYGFEKPSAIQQRSILPIVKGRDVIAQAQSGTGKTATFSISILQTLDTTL 438
L+ ELLR I GFE PS +QQ I + G DV+ QA+SG GKTA F +S LQ ++
Sbjct: 58 LKPELLRAITDSGFEHPSEVQQVCIPQSILGTDVLCQAKSGMGKTAVFVLSTLQQIEPVD 117
Query: 439 RETQVLILSPTRELATQI 492
E VL+L TRELA QI
Sbjct: 118 GEVSVLVLCHTRELAFQI 135
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 69.7 bits (163), Expect = 3e-13
Identities = 40/100 (40%), Positives = 58/100 (58%), Gaps = 6/100 (6%)
Frame = +1
Query: 241 TFDSMGLRDELLRGIYTYGFEKPSAIQQRSILPIVKGRDVIAQAQSGTGKTATFSISILQ 420
TF L L R I+ FEKP+++Q +I ++G+D++AQA++G+GKTA + I IL+
Sbjct: 15 TFSDFNLDPRLQRAIHKCEFEKPTSVQSETIPLALEGKDLVAQARTGSGKTAAYLIPILE 74
Query: 421 TL------DTTLRETQVLILSPTRELATQIXKVILALGDF 522
L D R L+L PTRELA Q+ V+ L F
Sbjct: 75 LLLKQKQIDENQRGIFALLLVPTRELAQQVYNVLEKLTAF 114
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 68.5 bits (160), Expect = 8e-13
Identities = 42/105 (40%), Positives = 62/105 (59%), Gaps = 4/105 (3%)
Frame = +1
Query: 199 NVEFDTSEDVEVIPTFDSMGLRDELLRGIYTYGFEKPSAIQQRSILPIVKGRDVIAQAQS 378
N+ ++ D+E F + L + + + I GFE + IQ+RSI P++ GRDV+ A++
Sbjct: 79 NLNASSTSDIE---KFSDLQLSENIQKAIKEMGFETMTEIQKRSIPPLLAGRDVLGAAKT 135
Query: 379 GTGKTATF---SISILQTLDTTLRE-TQVLILSPTRELATQIXKV 501
G+GKT F +I +L L R T V+I+SPTRELA QI V
Sbjct: 136 GSGKTLAFLIPTIEMLYALKFKPRNGTGVIIISPTRELALQIFGV 180
Score = 25.8 bits (54), Expect = 5.5
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +2
Query: 542 LVLGGTNLGXDIRKLDYGQHVVSGTPGXVFDMIR 643
+V+GG N + KL G +++ TPG + D ++
Sbjct: 194 IVIGGANRRAEADKLVKGVNLLVATPGRLLDHLQ 227
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 64.9 bits (151), Expect = 1e-11
Identities = 37/103 (35%), Positives = 60/103 (58%)
Frame = +1
Query: 241 TFDSMGLRDELLRGIYTYGFEKPSAIQQRSILPIVKGRDVIAQAQSGTGKTATFSISILQ 420
+F +G+ L+ + +P+ IQ+ I I++GR+ I A++G+GKTA F++ I++
Sbjct: 8 SFSDLGISPWLIDTLKALAIYEPTDIQEGVIAQILEGRNCIGGAKTGSGKTAAFALPIIE 67
Query: 421 TLDTTLRETQVLILSPTRELATQIXKVILALGDFMNVQCHACI 549
LIL+PTRELA QI + ALG +N++ HA I
Sbjct: 68 KWSKDPSGIFALILTPTRELAIQIDEQFAALGANLNLK-HALI 109
Score = 27.1 bits (57), Expect = 2.4
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +2
Query: 542 LVLGGTNLGXDIRKLDYGQHVVSGTPGXVFDMIR 643
L++GG ++ L HVV TPG + D+IR
Sbjct: 108 LIVGGMDMIRQSIDLSKRPHVVVATPGRLADLIR 141
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 60.9 bits (141), Expect = 2e-10
Identities = 40/149 (26%), Positives = 76/149 (51%), Gaps = 5/149 (3%)
Frame = +1
Query: 121 LEANXIRKMTSSEVSSNXKILSEDLSNVEFDTSEDVEVIPTFDSMGLRDELLRGIYTYGF 300
+E ++ ++ +EV L L ++ + + + ++ GL + + I + G+
Sbjct: 383 VEPEELKNLSPAEVDE----LRASLDGIKIRGIDCPKPVTSWSQCGLSAQTISVINSLGY 438
Query: 301 EKPSAIQQRSILPIVKGRDVIAQAQSGTGKTATFSISILQTL-DTTLRETQ----VLILS 465
EKP++IQ ++I I GRDVI A++G+GKT F + + + + D +T +I++
Sbjct: 439 EKPTSIQAQAIPAITSGRDVIGVAKTGSGKTIAFLLPMFRHIKDQRPLKTGEGPIAIIMT 498
Query: 466 PTRELATQIXKVILALGDFMNVQCHACIG 552
PTRELA QI + +N++ G
Sbjct: 499 PTRELAVQIFRECKPFLKLLNIRACCAYG 527
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 58.8 bits (136), Expect = 6e-10
Identities = 41/137 (29%), Positives = 73/137 (53%), Gaps = 3/137 (2%)
Frame = +1
Query: 151 SSEVSSNXKILSEDLSNVEFDTSEDVEVIPTFDSMGLRDELLRGIYTYGFEKPSAIQQRS 330
+ E + + I ++S + +SE++ I FD + + +L G+ Y ++P+ IQ +
Sbjct: 138 NDEEAYDRYIKKHNISFADPKSSENLLPILQFDELDVSAKLREGLKNY--KEPTPIQAAT 195
Query: 331 ILPIVKGRDVIAQAQSGTGKTATFSISILQTLD---TTLRETQVLILSPTRELATQIXKV 501
++ GRDV+ A++G+GKT F I LQ L+ +VL++SPTRELA Q +
Sbjct: 196 WPYLLAGRDVVGIAETGSGKTVAFGIPALQYLNGLSDNKSVPRVLVVSPTRELAIQTYEN 255
Query: 502 ILALGDFMNVQCHACIG 552
+ +L N++ G
Sbjct: 256 LNSLIQGTNLKAVVVYG 272
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 57.2 bits (132), Expect = 2e-09
Identities = 37/134 (27%), Positives = 73/134 (54%), Gaps = 8/134 (5%)
Frame = +1
Query: 175 KILSEDLSNVEFDTSEDVEVIPTFDSMGLRDELLRGIYTYGFEKPSAIQQRSILPIVKGR 354
+IL ED N+ + + ++ GL E+L+ + +++PS+IQ+ +I +++ +
Sbjct: 229 RILKEDY-NISIKGDDLPNPLRNWEEAGLPSEMLKVLKKVNYKEPSSIQRAAIPVLLQRK 287
Query: 355 DVIAQAQSGTGKTATFSISILQTLD--TTLRETQV------LILSPTRELATQIXKVILA 510
D+I A++G+GKTA F I ++ + L E+ + ++L+PTRELA QI
Sbjct: 288 DLIGIAETGSGKTAAFIIPLIIAISKLPPLTESNMHLGPYAVVLAPTRELAQQIQVEGNK 347
Query: 511 LGDFMNVQCHACIG 552
+ + +C + +G
Sbjct: 348 FAEPLGFRCVSVVG 361
Score = 30.3 bits (65), Expect = 0.25
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +2
Query: 530 FNVMLVLGGTNLGXDIRKLDYGQHVVSGTPGXVFDMIRRRV 652
F + V+GG ++ G H+V TPG + D + RR+
Sbjct: 354 FRCVSVVGGHAFEEQSFQMSQGAHIVVATPGRLLDCLERRL 394
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 56.0 bits (129), Expect = 4e-09
Identities = 42/121 (34%), Positives = 60/121 (49%), Gaps = 4/121 (3%)
Frame = +1
Query: 142 KMTS--SEVSSNXKILSEDLSNVEFDTSEDVEVIPTFDSMGLRDELLRGIYTYGFEKPSA 315
+MTS S+V+S L + S V+V + L E+L + GF KP
Sbjct: 89 EMTSLGSKVTSKNYNEFSTLEEEDEHNSHGVDV-SAWAHFSLSPEMLGSLSKAGFSKPMP 147
Query: 316 IQQRSILPIVKGRDVIAQAQSGTGKTATFSISILQ--TLDTTLRETQVLILSPTRELATQ 489
IQ I G D+I +A +G+GKT F I IL+ + + Q L+++PTRELA Q
Sbjct: 148 IQSLVIPEASIGFDIIGKADTGSGKTLAFGIPILEHCLRNVDAKYVQALVVAPTRELAHQ 207
Query: 490 I 492
I
Sbjct: 208 I 208
Score = 27.5 bits (58), Expect = 1.8
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = +2
Query: 509 LLEIS*TFNVMLVLGGTNLGXDIRKLDYGQHVVSGTPGXVFDMI 640
L++ S VM + GG + R L+ HVV TPG ++ +I
Sbjct: 214 LIKPSPNIRVMSITGGLAVQKQQRLLNKHPHVVVATPGRLWSVI 257
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 56.0 bits (129), Expect = 4e-09
Identities = 33/110 (30%), Positives = 60/110 (54%), Gaps = 5/110 (4%)
Frame = +1
Query: 235 IPTFDSMGLRDELLRGIYTYGFEKPSAIQQRSILPIVKGRDVIAQAQSGTGKTATFSISI 414
+ TF+ G + +L+ + GFE P+ IQQ++ + GRD++ + +G+GKT ++ +
Sbjct: 121 VTTFEEAGFPNYVLKEVKQLGFEAPTPIQQQAWPMAMSGRDMVGISATGSGKTLSYCLPA 180
Query: 415 L-----QTLDTTLRETQVLILSPTRELATQIXKVILALGDFMNVQCHACI 549
+ Q L + VL+L+PTRELA QI + G ++ + C+
Sbjct: 181 IVHINAQPLLSPGDGPIVLVLAPTRELAVQIQQECTKFGKSSRIR-NTCV 229
Score = 27.5 bits (58), Expect = 1.8
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = +2
Query: 545 VLGGTNLGXDIRKLDYGQHVVSGTPGXVFDMI 640
V GG G IR L G + TPG + DM+
Sbjct: 229 VYGGVPRGPQIRDLIRGVEICIATPGRLLDML 260
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 54.4 bits (125), Expect = 1e-08
Identities = 27/65 (41%), Positives = 40/65 (61%)
Frame = +1
Query: 223 DVEVIPTFDSMGLRDELLRGIYTYGFEKPSAIQQRSILPIVKGRDVIAQAQSGTGKTATF 402
D+E + F S L LL+ I G+ +P+ +Q+ SI + GRD++A AQ+G+GKTA F
Sbjct: 164 DIEPVNEFTSPPLNSHLLQNIKLSGYTQPTPVQKNSIPIVTSGRDLMACAQTGSGKTAGF 223
Query: 403 SISIL 417
IL
Sbjct: 224 LFPIL 228
Score = 33.1 bits (72), Expect = 0.036
Identities = 14/34 (41%), Positives = 22/34 (64%)
Frame = +2
Query: 545 VLGGTNLGXDIRKLDYGQHVVSGTPGXVFDMIRR 646
V GG ++ IR++D G ++S TPG + D+I R
Sbjct: 289 VYGGADIRAQIRQIDQGCDLLSATPGRLVDLIDR 322
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 53.6 bits (123), Expect = 2e-08
Identities = 32/112 (28%), Positives = 56/112 (50%), Gaps = 4/112 (3%)
Frame = +1
Query: 229 EVIPTFDSMGLRDELLRGIYTYGFEKPSAIQQRSILPIVKGRDVIAQAQSGTGKTATFSI 408
E + F + L + F + IQ++ I +KGRD++ A++G+GKT F +
Sbjct: 36 ETVDHFAELPLTQPTKSALKNAHFITLTEIQKQCIPSALKGRDILGAAKTGSGKTLAFIV 95
Query: 409 SILQTLD----TTLRETQVLILSPTRELATQIXKVILALGDFMNVQCHACIG 552
+++ L T+L L++SPTRELA Q + ++ +G + IG
Sbjct: 96 PLIENLYRKKWTSLDGLGALVISPTRELAIQTFETLVKIGRLHSFSAGLIIG 147
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 52.8 bits (121), Expect = 4e-08
Identities = 29/90 (32%), Positives = 49/90 (54%), Gaps = 3/90 (3%)
Frame = +1
Query: 241 TFDSMGLRDELLRGIYTYGFEKPSAIQQRSILPIVKGRDVIAQAQSGTGKTATFSISILQ 420
+F S+ + L + GF+K + +Q +I +K +D++ +A +G+GKT + +
Sbjct: 2 SFQSINIDKWLKNAVAAQGFKKMTPVQANAIPLFLKNKDLVVEAVTGSGKTLAYLLPCFD 61
Query: 421 TL---DTTLRETQVLILSPTRELATQIXKV 501
+ DT LI++PTRELATQI V
Sbjct: 62 KVTRRDTDETGLGALIVAPTRELATQIFNV 91
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 44.0 bits (99), Expect = 2e-05
Identities = 27/72 (37%), Positives = 42/72 (58%), Gaps = 6/72 (8%)
Frame = +1
Query: 295 GFEKPSAIQQRSILPIVKGRD-VIAQAQSGTGKTATFSISILQTL---DTTLRETQV--L 456
GFEK + +QQR + + + + QA++GTGKT F + + + L +++ +
Sbjct: 57 GFEKMTPVQQRVLNEVFPNEENAVVQAKTGTGKTLAFLLVAFKDVLKGKPRLNSSKIHSV 116
Query: 457 ILSPTRELATQI 492
ILSPTRELA QI
Sbjct: 117 ILSPTRELALQI 128
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 40.7 bits (91), Expect = 2e-04
Identities = 24/64 (37%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Frame = +1
Query: 310 SAIQQRSILPIVKGRDVIAQAQSGTGKTATFSISILQTLDTTL-RETQVLILSPTRELAT 486
+ IQ+ +I I RD++A A +G+GKT + ILQ L + + +I++PTREL
Sbjct: 70 TTIQRYAIPTIGSKRDLLACAPTGSGKTIAYLFPILQKLQLHVPGGYRAIIVAPTRELCE 129
Query: 487 QIXK 498
QI +
Sbjct: 130 QIYR 133
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 40.3 bits (90), Expect = 2e-04
Identities = 38/138 (27%), Positives = 63/138 (45%), Gaps = 9/138 (6%)
Frame = +1
Query: 115 KNLEANXIRKMTSSEVSSNXKILSEDLSNVEFDTSEDVEVIPTFDSMGLRDELLRGIYTY 294
+NLE N I + +++ +SN I + + + V+ DT L D L +
Sbjct: 114 QNLEDNQISNIGTTKEASNAPIKTTNFAGVQLDTQ-------------LADHLNNKM--- 157
Query: 295 GFEKPSAIQQRSILPIVK--GRDVIAQAQSGTGKTATFSISILQ-------TLDTTLRET 447
P+AIQ + ++ +D +AQ+G+GKT + + I+Q L T
Sbjct: 158 NISAPTAIQSCCLPALLNTDDKDAFIEAQTGSGKTLAYLLPIVQRLIRLPKNLHTRTSGI 217
Query: 448 QVLILSPTRELATQIXKV 501
+I++PTREL QI V
Sbjct: 218 YAVIMAPTRELCQQIYNV 235
>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1063
Score = 36.7 bits (81), Expect = 0.003
Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 1/93 (1%)
Frame = +1
Query: 250 SMGLRDELLRGIYTY-GFEKPSAIQQRSILPIVKGRDVIAQAQSGTGKTATFSISILQTL 426
S L EL+ +YT EK Q +I + G VI + +GK+ + I ILQ+L
Sbjct: 292 SRPLSQELINALYTSRNIEKTYKHQADAINHLWNGFHVIVSTSTSSGKSLIYQIPILQSL 351
Query: 427 DTTLRETQVLILSPTRELATQIXKVILALGDFM 525
+ T + PT+ LA K ++ + +M
Sbjct: 352 LEDNQSTAFFVF-PTKSLAQDQKKSLIDILSYM 383
>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2609
Score = 27.1 bits (57), Expect = 2.4
Identities = 17/60 (28%), Positives = 31/60 (51%)
Frame = +2
Query: 224 MSKLYPLLTPWDFEMSYCEEYTHMVSKNLQQFSREASCL*SKAEM**LKHNLVQERLRHS 403
MS L L T + FE++ +++ +++K + F + ++ EM L HN+ Q R S
Sbjct: 1124 MSFLVTLQTTYSFELTLNYDFSELLTKVVFPFLSPVDTITAEQEMRDLLHNIRQPLPRSS 1183
>SPAPB24D3.01 ||SPAPB2C8.02|transcription factor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 594
Score = 26.6 bits (56), Expect = 3.1
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = +2
Query: 14 CYLWLWTQFPKFPFTNLXIQILRGFHP 94
CYLW++ P PF L I+ G P
Sbjct: 502 CYLWVFLYCPFTPFLVLFSNIVNGKEP 528
>SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 973
Score = 26.6 bits (56), Expect = 3.1
Identities = 13/29 (44%), Positives = 20/29 (68%)
Frame = -1
Query: 284 IPRNNSSRSPMESKVGITSTSSLVSNSTF 198
I +NN+ +SP++ +V ITS SS +TF
Sbjct: 41 IIQNNTRKSPLK-RVSITSESSFYKENTF 68
>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2176
Score = 26.2 bits (55), Expect = 4.1
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Frame = +1
Query: 322 QRSILPIVKGRD--VIAQAQSGTGKTATFSISILQTLDTTLRE 444
Q + PI G D ++ A +G GKT + IL L LRE
Sbjct: 524 QSHLYPIAFGTDENILLCAPTGAGKTNVAMLCILNELQKHLRE 566
>SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 984
Score = 26.2 bits (55), Expect = 4.1
Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Frame = -3
Query: 357 ISAFDYRQDASLLNC*RF--FETICVYSSQ*LISKSH 253
I AF Y D LNC + ++T+C+ ++ +I SH
Sbjct: 784 IKAFTYNVDTKQLNCIKSWKYKTVCLVFAEAVIFGSH 820
>SPBC1773.12 |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 594
Score = 25.8 bits (54), Expect = 5.5
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +2
Query: 14 CYLWLWTQFPKFPFTNLXIQILR 82
CYLWL+ P PF L IL+
Sbjct: 502 CYLWLFLYCPFTPFQILFSNILK 524
>SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein
kinase Ppk5 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 836
Score = 25.8 bits (54), Expect = 5.5
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -1
Query: 296 PYVYIPRNNSSRSPMESKVGITSTSS 219
PY IP NN SPM VG + +++
Sbjct: 303 PYKSIPLNNRPYSPMSEIVGFSGSTT 328
>SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 606
Score = 25.8 bits (54), Expect = 5.5
Identities = 17/49 (34%), Positives = 21/49 (42%)
Frame = +1
Query: 352 RDVIAQAQSGTGKTATFSISILQTLDTTLRETQVLILSPTRELATQIXK 498
R + +G+GKTA F I Q LIL +ELA Q K
Sbjct: 47 RRIAVSLATGSGKTALFPHFIKYAPTLRPNSEQCLILVHRKELALQALK 95
>SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity factor
complex subunit, Fip1 homolog |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 344
Score = 25.0 bits (52), Expect = 9.5
Identities = 12/43 (27%), Positives = 19/43 (44%)
Frame = +1
Query: 187 EDLSNVEFDTSEDVEVIPTFDSMGLRDELLRGIYTYGFEKPSA 315
+DLS E D++ +PT D + + L + KP A
Sbjct: 94 QDLSTAETAPKVDIDAVPTIDGKNIFEIDLESFDDKPWRKPGA 136
>SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1690
Score = 25.0 bits (52), Expect = 9.5
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +1
Query: 148 TSSEVSSNXKILSEDLSNVEFDTSEDVEVIPT 243
+ SEV S + SE++ N+E ED E P+
Sbjct: 1337 SESEVGSKDDVQSEEVENLESAGDEDEEEEPS 1368
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,532,121
Number of Sequences: 5004
Number of extensions: 49372
Number of successful extensions: 221
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 206
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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