Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP03_F_C12
(653 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P52813 Cluster: 40S ribosomal protein S3a; n=17; Eukary... 185 7e-46
UniRef50_P61247 Cluster: 40S ribosomal protein S3a; n=209; Eukar... 158 1e-37
UniRef50_A7NWS5 Cluster: Chromosome chr5 scaffold_2, whole genom... 150 3e-35
UniRef50_Q54ZW5 Cluster: 40S ribosomal protein S3A; n=2; Dictyos... 132 9e-30
UniRef50_Q5EMY6 Cluster: 40S ribosomal protein S1-like protein; ... 120 4e-26
UniRef50_Q23DE3 Cluster: Ribosomal S3Ae family protein; n=1; Tet... 114 2e-24
UniRef50_UPI000049A095 Cluster: 40S ribosomal protein S3a; n=3; ... 113 3e-24
UniRef50_Q9U4U0 Cluster: Antigen; n=10; Trypanosomatidae|Rep: An... 111 1e-23
UniRef50_A0CCR3 Cluster: Chromosome undetermined scaffold_168, w... 109 8e-23
UniRef50_A3F4R3 Cluster: Ribosomal protein S3a; n=1; Taenia asia... 97 2e-19
UniRef50_UPI00005042B8 Cluster: UPI00005042B8 related cluster; n... 88 2e-16
UniRef50_Q7QT21 Cluster: GLP_675_17761_17015; n=1; Giardia lambl... 80 4e-14
UniRef50_UPI000041A636 Cluster: PREDICTED: similar to ribosomal ... 77 3e-13
UniRef50_Q8SS05 Cluster: 40S RIBOSOMAL PROTEIN S3A; n=1; Encepha... 77 3e-13
UniRef50_A2FDS0 Cluster: Ribosomal protein S3Ae, putative; n=4; ... 70 4e-11
UniRef50_UPI00015608D3 Cluster: PREDICTED: similar to ribosomal ... 68 2e-10
UniRef50_Q9AW90 Cluster: 40S ribosomal Protein S3a; n=1; Guillar... 66 5e-10
UniRef50_O27964 Cluster: 30S ribosomal protein S3Ae; n=1; Archae... 51 2e-05
UniRef50_Q3SAA8 Cluster: SSU ribosomal protein S3AE; n=2; enviro... 46 6e-04
UniRef50_Q8Q0F2 Cluster: 30S ribosomal protein S3Ae; n=6; Euryar... 46 0.001
UniRef50_Q8TVD1 Cluster: 30S ribosomal protein S3Ae; n=1; Methan... 46 0.001
UniRef50_Q6LZG0 Cluster: 30S ribosomal protein S3Ae; n=6; Methan... 44 0.004
UniRef50_A4GI78 Cluster: Ribosomal protein S3AE; n=1; uncultured... 43 0.007
UniRef50_Q9YCV8 Cluster: 30S ribosomal protein S3Ae; n=12; Archa... 42 0.013
UniRef50_A4YCU2 Cluster: Ribosomal protein S3Ae; n=1; Metallosph... 41 0.023
UniRef50_A0RTS7 Cluster: Ribosomal protein S3AE; n=2; Thermoprot... 40 0.069
UniRef50_A7D8P6 Cluster: FAD linked oxidase domain protein; n=3;... 35 1.5
UniRef50_A6NFQ6 Cluster: Uncharacterized protein ENSP00000341960... 35 2.0
UniRef50_Q3LW71 Cluster: Ribosomal protein S3a; n=1; Bigelowiell... 34 3.4
UniRef50_A2SQ57 Cluster: Ribosomal protein S3Ae; n=1; Methanocor... 34 3.4
UniRef50_Q01HQ6 Cluster: OSIGBa0153E02-OSIGBa0093I20.19 protein;... 33 4.5
UniRef50_Q4SVA9 Cluster: Chromosome undetermined SCAF13769, whol... 33 7.9
UniRef50_Q2S2G6 Cluster: Putative uncharacterized protein; n=1; ... 33 7.9
>UniRef50_P52813 Cluster: 40S ribosomal protein S3a; n=17;
Eukaryota|Rep: 40S ribosomal protein S3a - Anopheles
gambiae (African malaria mosquito)
Length = 269
Score = 185 bits (451), Expect = 7e-46
Identities = 87/112 (77%), Positives = 100/112 (89%)
Frame = +2
Query: 194 TKIASEGLKGRVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLX 373
TKIAS+GLKGRVFEVSLADLQ + DAERSFRKF+L+AE V GR+VL NFHGM LTTDKL
Sbjct: 55 TKIASDGLKGRVFEVSLADLQNEPDAERSFRKFKLVAESVNGRDVLTNFHGMALTTDKLR 114
Query: 374 WMVKKWQTLIEXNIDVXTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQXQS 529
MVKKWQTLIE ++DV TTDG++LRVFCIGFT KDS+SQRKTCYAQH+Q ++
Sbjct: 115 SMVKKWQTLIECSVDVKTTDGFMLRVFCIGFTIKDSMSQRKTCYAQHSQIKN 166
Score = 51.2 bits (117), Expect = 2e-05
Identities = 23/38 (60%), Positives = 30/38 (78%)
Frame = +3
Query: 531 IXKKMCEIITRDVTNSELRXVVNKLIPDSIAXDIEKAC 644
I KM II R++T+++L+ VV KL+PDSIA DIEKAC
Sbjct: 167 IRAKMTAIIKREITSTDLKGVVEKLLPDSIAKDIEKAC 204
Score = 40.7 bits (91), Expect = 0.030
Identities = 15/16 (93%), Positives = 16/16 (100%)
Frame = +3
Query: 90 IVDPFTRKDWYDVKAP 137
+VDPFTRKDWYDVKAP
Sbjct: 21 VVDPFTRKDWYDVKAP 36
Score = 33.1 bits (72), Expect = 6.0
Identities = 15/31 (48%), Positives = 20/31 (64%)
Frame = +1
Query: 139 SMFSKRQVGTTLVNRTQXNENCFGRIEGKSF 231
+MF RQVG TLVNRTQ + ++G+ F
Sbjct: 37 NMFKNRQVGKTLVNRTQGTKIASDGLKGRVF 67
>UniRef50_P61247 Cluster: 40S ribosomal protein S3a; n=209;
Eukaryota|Rep: 40S ribosomal protein S3a - Homo sapiens
(Human)
Length = 264
Score = 158 bits (383), Expect = 1e-37
Identities = 79/123 (64%), Positives = 93/123 (75%)
Frame = +2
Query: 173 LSTVPXATKIASEGLKGRVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMD 352
L T TKIAS+GLKGRVFEVSLADLQ D E +FRKF+LI E VQG+N L NFHGMD
Sbjct: 48 LVTRTQGTKIASDGLKGRVFEVSLADLQND---EVAFRKFKLITEDVQGKNCLTNFHGMD 104
Query: 353 LTTDKLXWMVKKWQTLIEXNIDVXTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQXQSN 532
LT DK+ MVKKWQT+IE ++DV TTDGY+LR+FC+GFT K + RKT YAQH Q +
Sbjct: 105 LTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRNNQIRKTSYAQHQQVRQI 164
Query: 533 XKE 541
K+
Sbjct: 165 RKK 167
Score = 59.7 bits (138), Expect = 6e-08
Identities = 28/43 (65%), Positives = 33/43 (76%)
Frame = +3
Query: 525 RAIXKKMCEIITRDVTNSELRXVVNKLIPDSIAXDIEKACHGI 653
R I KKM EI+TR+V ++L+ VVNKLIPDSI DIEKAC I
Sbjct: 162 RQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSI 204
Score = 37.9 bits (84), Expect = 0.21
Identities = 13/16 (81%), Positives = 16/16 (100%)
Frame = +3
Query: 90 IVDPFTRKDWYDVKAP 137
+VDPF++KDWYDVKAP
Sbjct: 21 VVDPFSKKDWYDVKAP 36
>UniRef50_A7NWS5 Cluster: Chromosome chr5 scaffold_2, whole genome
shotgun sequence; n=3; core eudicotyledons|Rep:
Chromosome chr5 scaffold_2, whole genome shotgun
sequence - Vitis vinifera (Grape)
Length = 656
Score = 150 bits (363), Expect = 3e-35
Identities = 74/109 (67%), Positives = 85/109 (77%)
Frame = +2
Query: 194 TKIASEGLKGRVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLX 373
TKIASEGLK RVFE+SLADLQAD D +++RK RL AE VQGRNVL NF GMD TTDKL
Sbjct: 449 TKIASEGLKHRVFEISLADLQADED--QAYRKIRLRAEDVQGRNVLTNFWGMDFTTDKLR 506
Query: 374 WMVKKWQTLIEXNIDVXTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQ 520
+V+KWQTLIE ++DV TTD Y LR+FCI FT K +KTCYAQ +Q
Sbjct: 507 SLVRKWQTLIEAHVDVKTTDNYTLRLFCIAFTKKRVNQNKKTCYAQSSQ 555
Score = 41.9 bits (94), Expect = 0.013
Identities = 21/55 (38%), Positives = 32/55 (58%)
Frame = +3
Query: 489 NARRATPSTLRXRAIXKKMCEIITRDVTNSELRXVVNKLIPDSIAXDIEKACHGI 653
N + + + R I +KM EI+T T+ +L+ +V K IP+SI +IEKA I
Sbjct: 545 NKKTCYAQSSQIRQIRRKMREIMTNMATSCDLKELVKKFIPESIGREIEKATSSI 599
Score = 34.3 bits (75), Expect = 2.6
Identities = 11/14 (78%), Positives = 13/14 (92%)
Frame = +3
Query: 96 DPFTRKDWYDVKAP 137
DPF +KDWYD+KAP
Sbjct: 417 DPFAKKDWYDIKAP 430
>UniRef50_Q54ZW5 Cluster: 40S ribosomal protein S3A; n=2;
Dictyostelium discoideum|Rep: 40S ribosomal protein S3A
- Dictyostelium discoideum AX4
Length = 273
Score = 132 bits (318), Expect = 9e-30
Identities = 66/118 (55%), Positives = 87/118 (73%)
Frame = +2
Query: 194 TKIASEGLKGRVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLX 373
TK+AS+GLKGRV+EVSLAD++ D + FRK +L AE V+GRNVL NF+GMDLT+DKL
Sbjct: 53 TKLASDGLKGRVYEVSLADMK--DDESQVFRKIKLRAEEVEGRNVLTNFYGMDLTSDKLR 110
Query: 374 WMVKKWQTLIEXNIDVXTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQXQSNXKENV 547
++ KW TLIE +DV TTDGY LRVF I FT K ++KT YA+ ++ ++ K+ V
Sbjct: 111 SLIHKWSTLIECFVDVKTTDGYFLRVFAICFTKKGESQKKKTSYAKTSRVKAIRKKMV 168
Score = 33.1 bits (72), Expect = 6.0
Identities = 12/15 (80%), Positives = 14/15 (93%)
Frame = +3
Query: 93 VDPFTRKDWYDVKAP 137
VDPFTRK+WY V+AP
Sbjct: 16 VDPFTRKEWYVVRAP 30
>UniRef50_Q5EMY6 Cluster: 40S ribosomal protein S1-like protein;
n=9; Dikarya|Rep: 40S ribosomal protein S1-like protein
- Magnaporthe grisea (Rice blast fungus) (Pyricularia
grisea)
Length = 256
Score = 120 bits (288), Expect = 4e-26
Identities = 58/111 (52%), Positives = 78/111 (70%)
Frame = +2
Query: 197 KIASEGLKGRVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLXW 376
K A++ LKGR+FEVSLADLQ D D +FRK +L + VQG+N L NFHG+D T+DKL
Sbjct: 55 KNANDALKGRIFEVSLADLQKDED--HAFRKIKLRVDEVQGKNCLTNFHGLDFTSDKLRS 112
Query: 377 MVKKWQTLIEXNIDVXTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQXQS 529
+V+KWQ+LIE N+ V TTD Y+LR+F I T + +KT YA +Q ++
Sbjct: 113 LVRKWQSLIEANVTVKTTDDYLLRLFAIAVTKRRPNQIKKTTYAASSQIRA 163
Score = 46.0 bits (104), Expect = 8e-04
Identities = 22/43 (51%), Positives = 29/43 (67%)
Frame = +3
Query: 525 RAIXKKMCEIITRDVTNSELRXVVNKLIPDSIAXDIEKACHGI 653
RAI +KM EII R+ + L+ + NKLIP+ I +IEKA GI
Sbjct: 162 RAIRRKMTEIIQREASTCTLQQLTNKLIPEVIGREIEKATQGI 204
Score = 32.7 bits (71), Expect = 7.9
Identities = 11/14 (78%), Positives = 12/14 (85%)
Frame = +3
Query: 96 DPFTRKDWYDVKAP 137
DPF RKDWY +KAP
Sbjct: 22 DPFARKDWYGIKAP 35
>UniRef50_Q23DE3 Cluster: Ribosomal S3Ae family protein; n=1;
Tetrahymena thermophila SB210|Rep: Ribosomal S3Ae family
protein - Tetrahymena thermophila SB210
Length = 265
Score = 114 bits (274), Expect = 2e-24
Identities = 55/122 (45%), Positives = 81/122 (66%), Gaps = 3/122 (2%)
Frame = +2
Query: 173 LSTVPXATKIASEGLKGRVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMD 352
L T +IASE +KGRV E +LADL+ D ++++RK +L+ + V GRN +F+G+D
Sbjct: 49 LVTKSSGNRIASEEIKGRVVESTLADLK-DNSNDKAWRKVKLVIDEVDGRNAKTSFYGLD 107
Query: 353 LTTDKLXWMVKKWQTLIEXNIDVXTTDGYVLRVFCIGFTNKDSL---SQRKTCYAQHTQX 523
+T D+L M++KWQTLIE +D T DGY++RVF + FT K S S TCYA+ +Q
Sbjct: 108 ITRDRLCSMIRKWQTLIEARVDCKTNDGYIIRVFTLAFTKKTSAGKQSSTSTCYAKSSQV 167
Query: 524 QS 529
++
Sbjct: 168 RA 169
>UniRef50_UPI000049A095 Cluster: 40S ribosomal protein S3a; n=3;
Entamoeba histolytica HM-1:IMSS|Rep: 40S ribosomal
protein S3a - Entamoeba histolytica HM-1:IMSS
Length = 257
Score = 113 bits (272), Expect = 3e-24
Identities = 59/115 (51%), Positives = 78/115 (67%)
Frame = +2
Query: 194 TKIASEGLKGRVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLX 373
T+IASE LKGRV EV+LADL + KF+ E V G++ L FHG+ LTTDKL
Sbjct: 56 TRIASEQLKGRVVEVNLADLMENEKFGAYNYKFK--CEDVNGKDCLMIFHGLKLTTDKLR 113
Query: 374 WMVKKWQTLIEXNIDVXTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQXQSNXK 538
+VKKW TLIE ++DV TTDG+++R+FCIGFT++ S +KT YA+ Q + K
Sbjct: 114 SIVKKWCTLIETSVDVKTTDGHLIRIFCIGFTSRKSNQIKKTSYAKSAQIKKIRK 168
>UniRef50_Q9U4U0 Cluster: Antigen; n=10; Trypanosomatidae|Rep:
Antigen - Leishmania major
Length = 264
Score = 111 bits (267), Expect = 1e-23
Identities = 47/106 (44%), Positives = 71/106 (66%)
Frame = +2
Query: 194 TKIASEGLKGRVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLX 373
T+IA++ L+GRVFE +LADL E ++RK R + VQGRN+L FH M++TTDK+
Sbjct: 55 TRIAADVLRGRVFEANLADLNQSAGEEEAYRKVRFTVQEVQGRNLLTQFHSMEVTTDKMA 114
Query: 374 WMVKKWQTLIEXNIDVXTTDGYVLRVFCIGFTNKDSLSQRKTCYAQ 511
+++KW T +E ++V T DGY +R+F + FT + Q + CYA+
Sbjct: 115 NLLRKWCTTMETTVEVKTADGYTMRLFVVAFTKPQANQQSRNCYAK 160
>UniRef50_A0CCR3 Cluster: Chromosome undetermined scaffold_168,
whole genome shotgun sequence; n=4; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_168,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 291
Score = 109 bits (261), Expect = 8e-23
Identities = 54/118 (45%), Positives = 77/118 (65%)
Frame = +2
Query: 194 TKIASEGLKGRVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLX 373
T +A+E +KGRV E SLADLQ +D + ++RK +LI + V+G +F+G+D T DK+
Sbjct: 52 TVVATEAIKGRVVEASLADLQGQSD-QMAWRKVKLIIDDVEGTRCRTSFYGLDSTKDKIF 110
Query: 374 WMVKKWQTLIEXNIDVXTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQXQSNXKENV 547
M+KK QTLIE ++ + DGY+LR+F I FT QRKT YAQ +Q + K+ V
Sbjct: 111 GMIKKRQTLIETQVEARSQDGYILRIFVIAFTKSIKNQQRKTTYAQRSQIKDIRKKIV 168
>UniRef50_A3F4R3 Cluster: Ribosomal protein S3a; n=1; Taenia
asiatica|Rep: Ribosomal protein S3a - Taenia asiatica
(Asian tapeworm)
Length = 183
Score = 97.5 bits (232), Expect = 2e-19
Identities = 50/89 (56%), Positives = 58/89 (65%)
Frame = +2
Query: 281 FRKFRLIAEYVQGRNVLCNFHGMDLTTDKLXWMVKKWQTLIEXNIDVXTTDGYVLRVFCI 460
FRKF+L E VQGR+ L NFHGMDLT DKL MV KWQ+ IE ++DV TTDGY LR F I
Sbjct: 7 FRKFKLQVEDVQGRHCLTNFHGMDLTHDKLCGMVLKWQSTIEAHVDVKTTDGYTLRFFVI 66
Query: 461 GFTNKDSLSQRKTCYAQHTQXQSNXKENV 547
FT K Q+ YAQ T+ + E V
Sbjct: 67 AFTKKQE-DQKSHAYAQTTRIKKLRAEIV 94
Score = 38.7 bits (86), Expect = 0.12
Identities = 17/43 (39%), Positives = 26/43 (60%)
Frame = +3
Query: 501 ATPSTLRXRAIXKKMCEIITRDVTNSELRXVVNKLIPDSIAXD 629
A T R + + ++ E++ R+V +L+ VV KLIPDSI D
Sbjct: 79 AYAQTTRIKKLRAEIVEVVQREVARCDLKSVVQKLIPDSIGQD 121
>UniRef50_UPI00005042B8 Cluster: UPI00005042B8 related cluster; n=1;
Rattus norvegicus|Rep: UPI00005042B8 UniRef100 entry -
Rattus norvegicus
Length = 237
Score = 87.8 bits (208), Expect = 2e-16
Identities = 52/110 (47%), Positives = 68/110 (61%), Gaps = 1/110 (0%)
Frame = +2
Query: 194 TKIASEGLKGRVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLX 373
TK+ S GL G VFE SLA LQ D RKF+LI E ++G+N L N +GMDLT DK
Sbjct: 40 TKMVSVGLNGLVFEASLASLQNDKVV---VRKFKLITEDMRGKNGLTNSYGMDLTWDKRC 96
Query: 374 WMVKKWQTLIEXNIDVXTTDGYVLRVFCIGF-TNKDSLSQRKTCYAQHTQ 520
V KWQ ++E + DV T D Y+L +FC+G+ TN + R+ AQ+ Q
Sbjct: 97 NKVIKWQ-MVEAHADVKTADYYLLCLFCVGYTTNVTTRYARQLVCAQYQQ 145
Score = 37.5 bits (83), Expect = 0.28
Identities = 14/30 (46%), Positives = 22/30 (73%)
Frame = +3
Query: 564 DVTNSELRXVVNKLIPDSIAXDIEKACHGI 653
D ++L+ V+NKL+PD++ D+EKAC I
Sbjct: 158 DQRRTDLKEVLNKLVPDNVGKDVEKACQFI 187
>UniRef50_Q7QT21 Cluster: GLP_675_17761_17015; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_675_17761_17015 - Giardia lamblia
ATCC 50803
Length = 248
Score = 80.2 bits (189), Expect = 4e-14
Identities = 40/111 (36%), Positives = 61/111 (54%)
Frame = +2
Query: 179 TVPXATKIASEGLKGRVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLT 358
T ++A++ + RV+EV+L DL + KF L + V L NFHGMD+T
Sbjct: 47 TKTAGLRVATDVINHRVYEVNLGDLNPGAEDLNGNTKFYLQTQLVSDGKCLTNFHGMDIT 106
Query: 359 TDKLXWMVKKWQTLIEXNIDVXTTDGYVLRVFCIGFTNKDSLSQRKTCYAQ 511
K + +K I+ +D+ TTDGY+LRVF I FT++ +RK C+ +
Sbjct: 107 RHKYGSLFRKGCDCIDVFMDIPTTDGYLLRVFVIAFTDRFRFQRRKNCHVK 157
>UniRef50_UPI000041A636 Cluster: PREDICTED: similar to ribosomal
protein S3a isoform 5; n=18; Eutheria|Rep: PREDICTED:
similar to ribosomal protein S3a isoform 5 - Homo
sapiens
Length = 211
Score = 77.4 bits (182), Expect = 3e-13
Identities = 43/72 (59%), Positives = 52/72 (72%)
Frame = +2
Query: 173 LSTVPXATKIASEGLKGRVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMD 352
L T TKIAS+G RVFEVSLADLQ D E +FRKF+LI E VQG+N L NFHG+D
Sbjct: 48 LVTRTQGTKIASDG---RVFEVSLADLQND---EVAFRKFKLITEDVQGKNCLTNFHGVD 101
Query: 353 LTTDKLXWMVKK 388
LT+DK+ ++K
Sbjct: 102 LTSDKITSQIRK 113
Score = 57.6 bits (133), Expect = 2e-07
Identities = 26/41 (63%), Positives = 32/41 (78%)
Frame = +3
Query: 531 IXKKMCEIITRDVTNSELRXVVNKLIPDSIAXDIEKACHGI 653
I KKM EI+TR+V ++L+ VVNKLIPDSI D+EKAC I
Sbjct: 111 IRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDVEKACQSI 151
Score = 35.9 bits (79), Expect = 0.85
Identities = 12/16 (75%), Positives = 15/16 (93%)
Frame = +3
Query: 90 IVDPFTRKDWYDVKAP 137
+VDPF++KDWYDV AP
Sbjct: 21 VVDPFSKKDWYDVNAP 36
>UniRef50_Q8SS05 Cluster: 40S RIBOSOMAL PROTEIN S3A; n=1;
Encephalitozoon cuniculi|Rep: 40S RIBOSOMAL PROTEIN S3A
- Encephalitozoon cuniculi
Length = 189
Score = 77.4 bits (182), Expect = 3e-13
Identities = 41/106 (38%), Positives = 58/106 (54%)
Frame = +2
Query: 221 GRVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLXWMVKKWQTL 400
GR ++V+ ADL + D RKF ++G + F GM+LT+DK M+KKW TL
Sbjct: 15 GRRYDVNQADLTGNNDV--GHRKFIFKIGDIKGSECVGFFDGMELTSDKHKAMIKKWHTL 72
Query: 401 IEXNIDVXTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQXQSNXK 538
IE D+ DG V RVF +G T + +KTCY +H+ + K
Sbjct: 73 IEAQKDIVAKDGSVFRVFVMGVTRRHPGYVKKTCYVKHSDEKKIRK 118
>UniRef50_A2FDS0 Cluster: Ribosomal protein S3Ae, putative; n=4;
Trichomonas vaginalis G3|Rep: Ribosomal protein S3Ae,
putative - Trichomonas vaginalis G3
Length = 247
Score = 70.1 bits (164), Expect = 4e-11
Identities = 38/104 (36%), Positives = 60/104 (57%)
Frame = +2
Query: 197 KIASEGLKGRVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLXW 376
++ + + RV+E+S AD+ D +R IA G V F GM LT DKL
Sbjct: 52 RVPMDYVNNRVWELSHADMVNDLSHAYRLFSWRSIAA---GSEVYTQFAGMRLTHDKLDS 108
Query: 377 MVKKWQTLIEXNIDVXTTDGYVLRVFCIGFTNKDSLSQRKTCYA 508
+++K++T+I+ ++D T DG++LR+F IGFT K + S + YA
Sbjct: 109 IMRKYRTMIDASVDAKTADGFILRLFTIGFTKKLANSHKNHTYA 152
>UniRef50_UPI00015608D3 Cluster: PREDICTED: similar to ribosomal
protein S3a; n=1; Equus caballus|Rep: PREDICTED: similar
to ribosomal protein S3a - Equus caballus
Length = 153
Score = 68.1 bits (159), Expect = 2e-10
Identities = 38/64 (59%), Positives = 44/64 (68%)
Frame = +2
Query: 173 LSTVPXATKIASEGLKGRVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMD 352
L T TKIAS+GLKG VFE+SLADLQ D E +FRKF+LI E VQG+ L NF M
Sbjct: 48 LVTRTQGTKIASDGLKGGVFEMSLADLQND---EVAFRKFKLITEDVQGKRCLINFRSMG 104
Query: 353 LTTD 364
L+ D
Sbjct: 105 LSCD 108
>UniRef50_Q9AW90 Cluster: 40S ribosomal Protein S3a; n=1; Guillardia
theta|Rep: 40S ribosomal Protein S3a - Guillardia theta
(Cryptomonas phi)
Length = 219
Score = 66.5 bits (155), Expect = 5e-10
Identities = 34/108 (31%), Positives = 56/108 (51%)
Frame = +2
Query: 206 SEGLKGRVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLXWMVK 385
+ + ++++VSLAD+ E S F + + FHG+ LT DK+ ++K
Sbjct: 54 NSSVDNKIYQVSLADILGKE--EFSSINFNFKSLKIFNNECFTKFHGLTLTRDKICSLIK 111
Query: 386 KWQTLIEXNIDVXTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQXQS 529
KW TLIE ++ T DGY L++F I + K + KT Y +Q ++
Sbjct: 112 KWHTLIEVEVNFKTKDGYFLKLFLIAQSKKPKNMKSKTVYINSSQKRA 159
>UniRef50_O27964 Cluster: 30S ribosomal protein S3Ae; n=1;
Archaeoglobus fulgidus|Rep: 30S ribosomal protein S3Ae -
Archaeoglobus fulgidus
Length = 211
Score = 51.2 bits (117), Expect = 2e-05
Identities = 29/92 (31%), Positives = 46/92 (50%)
Frame = +2
Query: 221 GRVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLXWMVKKWQTL 400
GR E +LA+L D + +++K V G N F +LT + L + ++ +
Sbjct: 46 GRTVETTLAELTNDYSNQNTYKKLIFKVYRVAGDNAYTKFWRFELTREYLNSLTRRRTSK 105
Query: 401 IEXNIDVXTTDGYVLRVFCIGFTNKDSLSQRK 496
IE +DV T DGY LRV + FT + + +K
Sbjct: 106 IEDIVDVTTADGYKLRVKSVVFTVRRCKTSQK 137
>UniRef50_Q3SAA8 Cluster: SSU ribosomal protein S3AE; n=2;
environmental samples|Rep: SSU ribosomal protein S3AE -
uncultured euryarchaeote Alv-FOS1
Length = 227
Score = 46.4 bits (105), Expect = 6e-04
Identities = 30/93 (32%), Positives = 48/93 (51%)
Frame = +2
Query: 221 GRVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLXWMVKKWQTL 400
GRV E +L DL + F++ VQG N F G D+TTD + M+++ ++
Sbjct: 49 GRVAESTLYDLSGNFKKMHVKLYFKI--NRVQGTNAYTRFIGHDMTTDYIRRMIRRRRSR 106
Query: 401 IEXNIDVXTTDGYVLRVFCIGFTNKDSLSQRKT 499
I+ +V T+DGY +RV + ++ S KT
Sbjct: 107 IDMIFNVETSDGYRMRVKVLTVPDRRIKSSIKT 139
>UniRef50_Q8Q0F2 Cluster: 30S ribosomal protein S3Ae; n=6;
Euryarchaeota|Rep: 30S ribosomal protein S3Ae -
Methanosarcina mazei (Methanosarcina frisia)
Length = 204
Score = 45.6 bits (103), Expect = 0.001
Identities = 31/93 (33%), Positives = 48/93 (51%)
Frame = +2
Query: 215 LKGRVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLXWMVKKWQ 394
L GR E ++ +L D ++ K L V G + G +LTTD + +VK+
Sbjct: 43 LVGRNVETTVGELT--NDMTKNNTKVILRVNNVVGDIATTDLMGHELTTDYVRSIVKRQT 100
Query: 395 TLIEXNIDVXTTDGYVLRVFCIGFTNKDSLSQR 493
+ I+ N+DV T DG+V+RV FT K + S +
Sbjct: 101 SRIDANVDVRTKDGFVIRVKPTCFTIKRARSSQ 133
>UniRef50_Q8TVD1 Cluster: 30S ribosomal protein S3Ae; n=1;
Methanopyrus kandleri|Rep: 30S ribosomal protein S3Ae -
Methanopyrus kandleri
Length = 211
Score = 45.6 bits (103), Expect = 0.001
Identities = 36/122 (29%), Positives = 54/122 (44%), Gaps = 2/122 (1%)
Frame = +2
Query: 209 EGLKGRVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLXWMVKK 388
E + GRV E +L D+ D FR+ V+G F G L D + +V++
Sbjct: 34 EKVIGRVLETTLGDVLDDITKHHIKVFFRIYD--VEGTTAYSKFEGHRLMRDYVRSLVRR 91
Query: 389 WQTLIEXNIDVXTTDGYVLRVFCIGFTNK--DSLSQRKTCYAQHTQXQSNXKENV*NHYT 562
+ I+ IDV T DGY +RV + FT + + QR + N KE + +
Sbjct: 92 GTSRIDGVIDVVTKDGYKVRVAGLAFTTRRAKTSQQRAIRKEMFKVIEENAKECDFDEFI 151
Query: 563 RR 568
RR
Sbjct: 152 RR 153
>UniRef50_Q6LZG0 Cluster: 30S ribosomal protein S3Ae; n=6;
Methanococcales|Rep: 30S ribosomal protein S3Ae -
Methanococcus maripaludis
Length = 225
Score = 43.6 bits (98), Expect = 0.004
Identities = 28/95 (29%), Positives = 46/95 (48%)
Frame = +2
Query: 215 LKGRVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLXWMVKKWQ 394
L GR+ E+SL DL + + F++ + V G N F G D T + L V++ +
Sbjct: 49 LIGRISEISLRDLTNEHSKHMTRMYFKV--DGVSGNNATSQFVGHDTTREYLKSQVRRRR 106
Query: 395 TLIEXNIDVXTTDGYVLRVFCIGFTNKDSLSQRKT 499
+ I ++V T DG+ +RV + T + KT
Sbjct: 107 SKINAIVEVRTKDGFKVRVKALVLTAVRARDHHKT 141
>UniRef50_A4GI78 Cluster: Ribosomal protein S3AE; n=1; uncultured
marine bacterium HF10_29C11|Rep: Ribosomal protein S3AE
- uncultured marine bacterium HF10_29C11
Length = 322
Score = 42.7 bits (96), Expect = 0.007
Identities = 25/91 (27%), Positives = 49/91 (53%)
Frame = +2
Query: 203 ASEGLKGRVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLXWMV 382
+ E + GR++E++ + D +FR ++E V G++ L F G T+ + +
Sbjct: 50 SDEHIIGRIYEMTQQEFNGDFTKMHVMLRFR-VSETV-GQDALTTFVGHHHQTNHIRRQI 107
Query: 383 KKWQTLIEXNIDVXTTDGYVLRVFCIGFTNK 475
++++ I+ IDV T DGY++R+ + T K
Sbjct: 108 RRYRGKIDDVIDVVTEDGYLVRIKPLIITQK 138
>UniRef50_Q9YCV8 Cluster: 30S ribosomal protein S3Ae; n=12;
Archaea|Rep: 30S ribosomal protein S3Ae - Aeropyrum
pernix
Length = 214
Score = 41.9 bits (94), Expect = 0.013
Identities = 26/95 (27%), Positives = 45/95 (47%)
Frame = +2
Query: 215 LKGRVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLXWMVKKWQ 394
L GRV E +L D+ D F+++ V+G F G +L D + + ++
Sbjct: 40 LIGRVMETTLFDITGDYSYVHVKMYFQVVR--VEGDTAYTRFKGHELLRDYIRGLTRRKS 97
Query: 395 TLIEXNIDVXTTDGYVLRVFCIGFTNKDSLSQRKT 499
+ + +V T DGY LRV + FT + + +K+
Sbjct: 98 SKVTGIFNVWTKDGYGLRVTAMAFTRQRCKTSQKS 132
>UniRef50_A4YCU2 Cluster: Ribosomal protein S3Ae; n=1;
Metallosphaera sedula DSM 5348|Rep: Ribosomal protein
S3Ae - Metallosphaera sedula DSM 5348
Length = 216
Score = 41.1 bits (92), Expect = 0.023
Identities = 23/83 (27%), Positives = 40/83 (48%)
Frame = +2
Query: 221 GRVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLXWMVKKWQTL 400
GR E +L DL D F+++ +G + F G +L+ D + +V++ +
Sbjct: 50 GRKVETTLYDLTGDFSTVYVHLYFKVVRN--EGERLFTEFAGHELSRDYVRSLVRRKSSK 107
Query: 401 IEXNIDVXTTDGYVLRVFCIGFT 469
I +D+ T DG+ LRV + T
Sbjct: 108 INKVVDITTKDGFTLRVKTLALT 130
>UniRef50_A0RTS7 Cluster: Ribosomal protein S3AE; n=2;
Thermoprotei|Rep: Ribosomal protein S3AE - Cenarchaeum
symbiosum
Length = 203
Score = 39.5 bits (88), Expect = 0.069
Identities = 23/93 (24%), Positives = 47/93 (50%)
Frame = +2
Query: 218 KGRVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLXWMVKKWQT 397
KGRV EV+L D+ + +++ + I + V + F + + + L +V++ +
Sbjct: 43 KGRVIEVTLFDILKGDPQQNNYKIYFQI-DKVSEESATSIFKRYEYSKEYLRSLVRRGSS 101
Query: 398 LIEXNIDVXTTDGYVLRVFCIGFTNKDSLSQRK 496
+ +DV T+DGYV R+ + T + + +K
Sbjct: 102 KVNYIVDVKTSDGYVFRLKVLALTYRHLNTSKK 134
>UniRef50_A7D8P6 Cluster: FAD linked oxidase domain protein; n=3;
Alphaproteobacteria|Rep: FAD linked oxidase domain
protein - Methylobacterium extorquens PA1
Length = 990
Score = 35.1 bits (77), Expect = 1.5
Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 1/85 (1%)
Frame = -1
Query: 332 RAHYVLAHIRRLI*ICGKTFPRQCQLVDQPGKLRKLFPSILPKQFSLXWVRLTSVVPTCL 153
R H V+AH R CG+T+ Q + R+ ++LP F R+ + P+CL
Sbjct: 774 RLHRVIAHEGRRPLCCGRTYLASGQTDRAREEARRTLDTLLP--FVRAGARVVGLEPSCL 831
Query: 152 LLNIERSLDIVP-IFASEWVDNLLL 81
L + L ++P ASE + LL
Sbjct: 832 LTFRDEFLSLLPRAEASELAQSALL 856
>UniRef50_A6NFQ6 Cluster: Uncharacterized protein ENSP00000341960;
n=40; Coelomata|Rep: Uncharacterized protein
ENSP00000341960 - Homo sapiens (Human)
Length = 79
Score = 34.7 bits (76), Expect = 2.0
Identities = 15/19 (78%), Positives = 15/19 (78%)
Frame = +3
Query: 597 NKLIPDSIAXDIEKACHGI 653
NKLIPDSI DIEKAC I
Sbjct: 1 NKLIPDSIGKDIEKACQSI 19
>UniRef50_Q3LW71 Cluster: Ribosomal protein S3a; n=1; Bigelowiella
natans|Rep: Ribosomal protein S3a - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 215
Score = 33.9 bits (74), Expect = 3.4
Identities = 27/109 (24%), Positives = 51/109 (46%), Gaps = 1/109 (0%)
Frame = +2
Query: 224 RVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVL-CNFHGMDLTTDKLXWMVKKWQTL 400
R EVSL++L D S+ K + Y + + F+G L+ D + MV K L
Sbjct: 62 RNLEVSLSELINDYS---SYYKIIKLQPYTMNKMFIRTTFNGFRLSYDFIFSMVLKPTKL 118
Query: 401 IEXNIDVXTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQXQSNXKENV 547
+E +I + T V+ +F + +T +L Y + ++ + +E++
Sbjct: 119 VEFSIKINTLKKKVVEIFVL-YTITKNLHSNSITYGKRSRIRKINRESI 166
>UniRef50_A2SQ57 Cluster: Ribosomal protein S3Ae; n=1;
Methanocorpusculum labreanum Z|Rep: Ribosomal protein
S3Ae - Methanocorpusculum labreanum (strain ATCC 43576 /
DSM 4855 / Z)
Length = 206
Score = 33.9 bits (74), Expect = 3.4
Identities = 29/96 (30%), Positives = 44/96 (45%), Gaps = 2/96 (2%)
Frame = +2
Query: 209 EGLKGRVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLXWMVKK 388
E + GRV VSL +L D + F+++ V G F+G ++T + + MVKK
Sbjct: 43 ENVPGRVLTVSLGELIQDYSKQNVRASFKIMN--VAGDAAYTQFNGHEMTKEFVRAMVKK 100
Query: 389 WQTLIEXNIDVXTTDG-YVLRVFCIGFT-NKDSLSQ 490
+ ++ I V L+V FT N LSQ
Sbjct: 101 RASRVDSTITVTPLGSTRELQVTITAFTINHARLSQ 136
>UniRef50_Q01HQ6 Cluster: OSIGBa0153E02-OSIGBa0093I20.19 protein;
n=42; Oryza sativa|Rep: OSIGBa0153E02-OSIGBa0093I20.19
protein - Oryza sativa (Rice)
Length = 1752
Score = 33.5 bits (73), Expect = 4.5
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Frame = +3
Query: 303 PNMCK-DVMCSATSTAWTSQPISSXGWLKNGRL--SSXPTLM*XQPMDTFYVSSALVSPI 473
P CK + WTS P+++ GW NGR+ + PTL Q + ++ A VS +
Sbjct: 1631 PGKCKLHAWLIIQNRVWTSDPLATRGWQNNGRVPPARTPTLGVAQSVKDWWEMLASVSGV 1690
>UniRef50_Q4SVA9 Cluster: Chromosome undetermined SCAF13769, whole
genome shotgun sequence; n=3; Tetraodontidae|Rep:
Chromosome undetermined SCAF13769, whole genome shotgun
sequence - Tetraodon nigroviridis (Green puffer)
Length = 556
Score = 32.7 bits (71), Expect = 7.9
Identities = 19/55 (34%), Positives = 32/55 (58%)
Frame = -3
Query: 417 SMLXSMRVCHFLTIHXSLSVVRSMPWKLQSTLRPCTYSAINLNLRKDLSASVSAC 253
S+L S+ +C L++ SLS+ S+ + +LRPC ++ ++L LS VS C
Sbjct: 389 SVLVSLSLCLSLSVLVSLSLSSSLSLSVPVSLRPCLSLSVLVSL--SLSVPVSLC 441
>UniRef50_Q2S2G6 Cluster: Putative uncharacterized protein; n=1;
Salinibacter ruber DSM 13855|Rep: Putative
uncharacterized protein - Salinibacter ruber (strain DSM
13855)
Length = 124
Score = 32.7 bits (71), Expect = 7.9
Identities = 17/48 (35%), Positives = 24/48 (50%)
Frame = -1
Query: 635 LDVXGNGVRNQLVHHLPEFRVSDVACNDFTHFLXDCSXPECAGRSTSC 492
L G+G Q ++H+PE +A NDF F + S PE A + C
Sbjct: 20 LPETGSGFHKQTLYHVPEETARQIA-NDFESF-ANASTPEAAEEAVPC 65
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 617,551,810
Number of Sequences: 1657284
Number of extensions: 11674942
Number of successful extensions: 29797
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 28963
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29783
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 49173558301
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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