Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP03_F_C12
(653 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC13G6.02c |rps101|rps1-1, rps3a-1|40S ribosomal protein S3a|S... 115 5e-27
SPAC22H12.04c |rps102|rps1-2, rps3a-2|40S ribosomal protein S3a|... 113 2e-26
SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomy... 28 1.4
SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz... 27 1.8
SPBC106.11c |plg7||phospholipase A2 |Schizosaccharomyces pombe|c... 26 4.1
SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces pombe... 25 9.5
>SPAC13G6.02c |rps101|rps1-1, rps3a-1|40S ribosomal protein
S3a|Schizosaccharomyces pombe|chr 1|||Manual
Length = 252
Score = 115 bits (277), Expect = 5e-27
Identities = 56/111 (50%), Positives = 79/111 (71%)
Frame = +2
Query: 197 KIASEGLKGRVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLXW 376
K A++ LKGR+ EVSLADLQ D E SFRK +L E +QG++ L +F+G D+T+DKL
Sbjct: 55 KNANDSLKGRILEVSLADLQKDE--EHSFRKVKLRVEDIQGKSCLTSFNGFDMTSDKLRS 112
Query: 377 MVKKWQTLIEXNIDVXTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQXQS 529
+V+KWQ+ IE N + TTDGY+ R+F IGFT++ +KT YAQ +Q ++
Sbjct: 113 LVRKWQSTIEANQTIKTTDGYLCRIFVIGFTSRRVNQVKKTTYAQSSQIRA 163
Score = 39.9 bits (89), Expect = 3e-04
Identities = 13/20 (65%), Positives = 18/20 (90%)
Frame = +3
Query: 90 IVDPFTRKDWYDVKAPLYVQ 149
+VDPF+RKDWYD+KAP + +
Sbjct: 20 VVDPFSRKDWYDIKAPAFFE 39
Score = 35.9 bits (79), Expect = 0.005
Identities = 17/43 (39%), Positives = 25/43 (58%)
Frame = +3
Query: 525 RAIXKKMCEIITRDVTNSELRXVVNKLIPDSIAXDIEKACHGI 653
RAI +KM ++I ++ +V KLIP+ I IEKA + I
Sbjct: 162 RAIHQKMFQVIQNQANGCSMKELVQKLIPEVIGRAIEKATNNI 204
Score = 25.4 bits (53), Expect = 7.2
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +1
Query: 139 SMFSKRQVGTTLVNRTQXNENCFGRIEGK 225
+ F + VG TLVNRT +N ++G+
Sbjct: 36 AFFEVKNVGKTLVNRTAGLKNANDSLKGR 64
>SPAC22H12.04c |rps102|rps1-2, rps3a-2|40S ribosomal protein
S3a|Schizosaccharomyces pombe|chr 1|||Manual
Length = 252
Score = 113 bits (272), Expect = 2e-26
Identities = 55/111 (49%), Positives = 79/111 (71%)
Frame = +2
Query: 197 KIASEGLKGRVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLXW 376
K A++ LKGR+ EVSLADLQ D E +FRK +L E +QG++ L +F+G+ +T+DKL
Sbjct: 55 KNANDSLKGRILEVSLADLQKDE--EHAFRKVKLRVEDIQGKSCLTSFNGLSITSDKLRS 112
Query: 377 MVKKWQTLIEXNIDVXTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQXQS 529
+V+KWQT IE + + TTDGY+ RVF IGFT + + +KT YAQ +Q ++
Sbjct: 113 LVRKWQTTIEADQTIKTTDGYLCRVFVIGFTRRRANQVKKTTYAQSSQIRA 163
Score = 38.3 bits (85), Expect = 0.001
Identities = 12/20 (60%), Positives = 18/20 (90%)
Frame = +3
Query: 90 IVDPFTRKDWYDVKAPLYVQ 149
+VDPF+RK+WYD+KAP + +
Sbjct: 20 VVDPFSRKEWYDIKAPAFFE 39
Score = 37.1 bits (82), Expect = 0.002
Identities = 17/43 (39%), Positives = 27/43 (62%)
Frame = +3
Query: 525 RAIXKKMCEIITRDVTNSELRXVVNKLIPDSIAXDIEKACHGI 653
RAI +KM ++I ++ +R +V KLIP+ I +IE+A I
Sbjct: 162 RAIRQKMFQVIQNQTSSCSMRELVQKLIPEVIGREIERATGSI 204
Score = 25.4 bits (53), Expect = 7.2
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +1
Query: 139 SMFSKRQVGTTLVNRTQXNENCFGRIEGK 225
+ F + VG TLVNRT +N ++G+
Sbjct: 36 AFFEVKNVGKTLVNRTAGLKNANDSLKGR 64
>SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1019
Score = 27.9 bits (59), Expect = 1.4
Identities = 20/71 (28%), Positives = 33/71 (46%)
Frame = +2
Query: 194 TKIASEGLKGRVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLX 373
TK+A KG +V++ L+ DAE + + F I EY++ N D T K
Sbjct: 91 TKLAET--KGAAADVNI--LKRTKDAEENKKLFEKIIEYIRATNKKVGVFPKDKTQGK-- 144
Query: 374 WMVKKWQTLIE 406
+ +W ++ E
Sbjct: 145 -FINEWDSIFE 154
>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1273
Score = 27.5 bits (58), Expect = 1.8
Identities = 10/36 (27%), Positives = 19/36 (52%)
Frame = -1
Query: 230 KLFPSILPKQFSLXWVRLTSVVPTCLLLNIERSLDI 123
K+ + K+ ++ W +L V C +N+E S+ I
Sbjct: 649 KVLDMVEVKKLNILWEKLLEYVSVCFFINVEESVRI 684
>SPBC106.11c |plg7||phospholipase A2 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 438
Score = 26.2 bits (55), Expect = 4.1
Identities = 16/46 (34%), Positives = 23/46 (50%)
Frame = -3
Query: 288 LRKDLSASVSACRSARETSKTLPFNPSEAIFVALGTVDKRGADLPL 151
+ KD S + +A SA E +P +FV GTV +DLP+
Sbjct: 332 VNKD-SENQNAGESADEKMSVVPLKKYSHVFVYDGTVHANQSDLPI 376
>SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 882
Score = 25.0 bits (52), Expect = 9.5
Identities = 12/40 (30%), Positives = 19/40 (47%)
Frame = +2
Query: 389 WQTLIEXNIDVXTTDGYVLRVFCIGFTNKDSLSQRKTCYA 508
W L+ T GYV+R GFT+ ++ + K +A
Sbjct: 801 WDKLLSRLPVAGTMRGYVVRFVTSGFTHASAIDKIKEFFA 840
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,522,948
Number of Sequences: 5004
Number of extensions: 48496
Number of successful extensions: 118
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -