Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP03_F_C08
(599 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC57A10.10c |sla1||La protein homolog|Schizosaccharomyces pomb... 75 8e-15
SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 46 4e-06
SPAC22H10.11c ||||Schizosaccharomyces pombe|chr 1|||Manual 31 0.13
SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces pom... 27 2.8
SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase Ub... 26 3.7
SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66 |... 26 4.8
SPBC106.19 ||SPBC582.01|sequence orphan|Schizosaccharomyces pomb... 26 4.8
SPBC1734.08 |hse1||STAM like protein Hse1|Schizosaccharomyces po... 25 6.4
SPBC337.06c |cwf15||complexed with Cdc5 protein Cwf15 |Schizosac... 25 6.4
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ... 25 6.4
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch... 25 6.4
SPAC3G9.07c |hos2|hda1, phd1|histone deacetylase |Schizosaccharo... 25 6.4
SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|ch... 25 6.4
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 25 6.4
SPCC132.01c ||SPCC1322.17c|DUF814 family protein|Schizosaccharom... 25 8.5
SPAC6B12.12 |tom70||mitochondrial TOM complex subunit Tom70|Schi... 25 8.5
>SPAC57A10.10c |sla1||La protein homolog|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 298
Score = 74.9 bits (176), Expect = 8e-15
Identities = 45/123 (36%), Positives = 69/123 (56%), Gaps = 1/123 (0%)
Frame = +2
Query: 137 NQKVFSIKESHRVIPEIKMTEDKEVTVETNGQ-EENAKTENSEDETELDIAIIRQVEYYF 313
+ +V +E+ +V+ K T +E ET + E++ K + S DE E +++QVE+YF
Sbjct: 20 SSEVPKAEEAGKVVESQKDTTSEEKKEETTEKKEDDGKKDLSFDEAE----VLKQVEFYF 75
Query: 314 GDVNLHRDKFLQEQIKLDDGWVPLXILTKFNRLAKLTEDTDVIANALNKSTSGLLEVSEX 493
D NL DKFL + +DGWVP+ + F R+ + + + I NAL KS LLEV E
Sbjct: 76 SDTNLPHDKFLWTTSQKNDGWVPIQTIANFKRMRRF-QPLEAIVNALRKSPE-LLEVDEA 133
Query: 494 NKK 502
+K
Sbjct: 134 GEK 136
>SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 475
Score = 46.0 bits (104), Expect = 4e-06
Identities = 22/56 (39%), Positives = 34/56 (60%)
Frame = +2
Query: 296 QVEYYFGDVNLHRDKFLQEQIKLDDGWVPLXILTKFNRLAKLTEDTDVIANALNKS 463
Q+EYYF NL +D FL++ + D+G+VPL L FNR+ + D +++ A S
Sbjct: 332 QLEYYFSIENLCKDMFLRKHMD-DEGYVPLAFLASFNRIKSFSTDLNLLHAACKAS 386
>SPAC22H10.11c ||||Schizosaccharomyces pombe|chr 1|||Manual
Length = 629
Score = 31.1 bits (67), Expect = 0.13
Identities = 12/49 (24%), Positives = 25/49 (51%)
Frame = +2
Query: 224 NGQEENAKTENSEDETELDIAIIRQVEYYFGDVNLHRDKFLQEQIKLDD 370
NG + + E E+E + + + ++ N HR++FL E + +D+
Sbjct: 194 NGFSTSTEEEEEEEEDIVSASWVDNLDMDMASFNSHRERFLTEHVNMDE 242
>SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 649
Score = 26.6 bits (56), Expect = 2.8
Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Frame = +2
Query: 152 SIKESHRVIPEIKMTEDKEVTVETNGQEENAKTENSEDETEL-DIAIIRQVEYYFGDVNL 328
S +E+ + +PE + T + T E +EE + E E+E E+ + ++E GD++L
Sbjct: 331 SEEEAVKSLPETQRTTSRIETQEEEIKEEEMEGEEEEEEEEVPNYESENELEDKVGDLSL 390
>SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase
Ubp21|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1129
Score = 26.2 bits (55), Expect = 3.7
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +2
Query: 380 PLXILTKFNRLAKLTEDTDVIANALNKSTSGLLEVSEXNKKSET 511
P+ I TK R A + + +A LN+ TSG+ N+++ T
Sbjct: 617 PVLITTKIKRNANIWDLQKHLAGLLNRDTSGIRIWLMTNRQNRT 660
>SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 649
Score = 25.8 bits (54), Expect = 4.8
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +2
Query: 191 MTEDKEVTVETNGQEENAKTENSEDE 268
+ ED V + +E N + EN+EDE
Sbjct: 464 LVEDTSVDISATLEEANTQQENAEDE 489
>SPBC106.19 ||SPBC582.01|sequence orphan|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 515
Score = 25.8 bits (54), Expect = 4.8
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = -3
Query: 369 SSNFICSCRNLSRC 328
S NF+CSCR S C
Sbjct: 7 SRNFLCSCRGFSVC 20
>SPBC1734.08 |hse1||STAM like protein Hse1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 373
Score = 25.4 bits (53), Expect = 6.4
Identities = 24/116 (20%), Positives = 51/116 (43%), Gaps = 1/116 (0%)
Frame = +2
Query: 251 ENSEDETELDIAIIRQVEYYFGDVNLHRDKFLQEQIKLDDGWVPLXILTKFNRLAKLTED 430
+N++++ ++ + Q+ GDV + KFL +++ + + L LT + + K +
Sbjct: 20 KNTKEKWDVIMDACDQLSSTSGDVGRNSIKFLNKRLDTANANIQLLALTLTDAIVKNCKT 79
Query: 431 TDVIANALNKSTSGLLEV-SEXNKKSET*SXTATARNERRAS*RNMQQIXLCERIC 595
+ V + T LL++ S+ + S A NE + + L + IC
Sbjct: 80 SIVREISSRTFTDSLLKIASDSTTHNRVRSRIAVLVNEWAEIMKKDPNMSLMQDIC 135
>SPBC337.06c |cwf15||complexed with Cdc5 protein Cwf15
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 265
Score = 25.4 bits (53), Expect = 6.4
Identities = 18/68 (26%), Positives = 35/68 (51%)
Frame = +2
Query: 152 SIKESHRVIPEIKMTEDKEVTVETNGQEENAKTENSEDETELDIAIIRQVEYYFGDVNLH 331
S K S I K + + +V+++ E + + +SEDET+ ++R++E
Sbjct: 128 SNKNSEVSIKRRKTESNSQESVDSSNSESSDEESDSEDETQ---QLLRELENI--KQERK 182
Query: 332 RDKFLQEQ 355
R++ LQE+
Sbjct: 183 REQMLQEE 190
>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1888
Score = 25.4 bits (53), Expect = 6.4
Identities = 18/69 (26%), Positives = 34/69 (49%), Gaps = 6/69 (8%)
Frame = +2
Query: 110 RSLNKLVF*NQK--VFSIKESHRVIPEIKMTEDKEVT----VETNGQEENAKTENSEDET 271
++ NKL N + + S K S +PE+ E + ET +EEN +TE + +
Sbjct: 45 KNQNKLEILNNETTIGSTKSSVSSLPELNRNVSFEKSDQNLAETKREEENKRTEVFKKDA 104
Query: 272 ELDIAIIRQ 298
E + ++++
Sbjct: 105 EHEAVVVKR 113
>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2176
Score = 25.4 bits (53), Expect = 6.4
Identities = 11/40 (27%), Positives = 23/40 (57%)
Frame = +2
Query: 158 KESHRVIPEIKMTEDKEVTVETNGQEENAKTENSEDETEL 277
+E+ + E ++ ED++V +ET+ +E K +TE+
Sbjct: 241 EEAVEAMEEDEVAEDEDVVLETSISQEEEKKNIENPDTEV 280
>SPAC3G9.07c |hos2|hda1, phd1|histone deacetylase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 25.4 bits (53), Expect = 6.4
Identities = 8/27 (29%), Positives = 18/27 (66%)
Frame = -1
Query: 374 IRHLILFVLAEIYLDVDLHHQNNIRLA 294
I +++ F +Y+D+D+HH + ++ A
Sbjct: 177 ILNMLRFFPRVLYIDIDIHHGDGVQQA 203
>SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 845
Score = 25.4 bits (53), Expect = 6.4
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -3
Query: 411 RRLNFVRIXNGTHPSSNFICSCRNLSRCRF 322
R N R+ + P+SN +C RN S+CRF
Sbjct: 352 RSSNRFRLFPASTPNSNGLC--RNDSKCRF 379
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 25.4 bits (53), Expect = 6.4
Identities = 12/44 (27%), Positives = 27/44 (61%)
Frame = +2
Query: 143 KVFSIKESHRVIPEIKMTEDKEVTVETNGQEENAKTENSEDETE 274
K F +K + R + E+K + D+E +V+ +E+ +K E+ + + +
Sbjct: 44 KAFLLKMAKRSVEELKRSADEEASVKR--KEKKSKHEHKKHKKD 85
>SPCC132.01c ||SPCC1322.17c|DUF814 family protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1021
Score = 25.0 bits (52), Expect = 8.5
Identities = 19/89 (21%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
Frame = +2
Query: 200 DKEVTVETNGQEENAKTENSEDETELDIAIIRQVEYYFGDVNLHRDKFLQEQ-IKLDDGW 376
+K ++ E ++++AK E+ + + E+ ++ ++ +F +L + Q+ I +
Sbjct: 886 EKGLSTEQRDEKKHAKVESFQRQ-EMPRSLFEEI--FFAIDSLTPNPQQQDTVINAVPTF 942
Query: 377 VPLXILTKFNRLAKLTEDTDVIANALNKS 463
P +TKFN+ K+ T + A +S
Sbjct: 943 APYNAMTKFNQKVKVMPGTGKVGKAARES 971
>SPAC6B12.12 |tom70||mitochondrial TOM complex subunit
Tom70|Schizosaccharomyces pombe|chr 1|||Manual
Length = 625
Score = 25.0 bits (52), Expect = 8.5
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +2
Query: 158 KESHRVIPEIKMTEDKEVTVETNGQEENAKTENSED 265
K SH+ ++K +DK + G+ E AK ED
Sbjct: 55 KASHKRSKKLKAHQDKAESKVNEGKNEAAKVVKEED 90
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,206,749
Number of Sequences: 5004
Number of extensions: 42497
Number of successful extensions: 140
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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