Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_C08
         (599 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10576| Best HMM Match : La (HMM E-Value=6.9e-28)                    60   2e-09
SB_13046| Best HMM Match : La (HMM E-Value=5e-23)                      47   1e-05
SB_7622| Best HMM Match : Arfaptin (HMM E-Value=0)                     32   0.31 
SB_30685| Best HMM Match : RRM_1 (HMM E-Value=2e-07)                   31   0.71 
SB_13703| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.71 
SB_39376| Best HMM Match : Alpha-amylase_C (HMM E-Value=0.49)          29   2.2  
SB_40168| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_33399| Best HMM Match : Ank (HMM E-Value=0)                         29   3.8  
SB_52656| Best HMM Match : ABC_tran (HMM E-Value=0)                    28   5.0  
SB_21866| Best HMM Match : UCH (HMM E-Value=0)                         28   5.0  
SB_1572| Best HMM Match : Drf_FH1 (HMM E-Value=0.27)                   28   5.0  
SB_32578| Best HMM Match : Methyltransf_2 (HMM E-Value=2.2e-17)        28   6.6  
SB_12468| Best HMM Match : zf-C2H2 (HMM E-Value=9.8e-30)               28   6.6  
SB_44626| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  
SB_36385| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  
SB_49900| Best HMM Match : GETHR (HMM E-Value=5e-18)                   27   8.8  
SB_41386| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.8  

>SB_10576| Best HMM Match : La (HMM E-Value=6.9e-28)
          Length = 711

 Score = 59.7 bits (138), Expect = 2e-09
 Identities = 26/60 (43%), Positives = 41/60 (68%)
 Frame = +2

Query: 263 DETELDIAIIRQVEYYFGDVNLHRDKFLQEQIKLDDGWVPLXILTKFNRLAKLTEDTDVI 442
           DE  L   I RQ+EYYF + NLH+D FL++Q+  D+G++P+ ++  F R+  LT D ++I
Sbjct: 117 DEKTLQEYIKRQIEYYFSEANLHKDFFLRKQMD-DEGYIPIALIASFYRVQALTHDMNLI 175


>SB_13046| Best HMM Match : La (HMM E-Value=5e-23)
          Length = 442

 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 19/57 (33%), Positives = 38/57 (66%), Gaps = 1/57 (1%)
 Frame = +2

Query: 296 QVEYYFGDVNLHRDKFLQEQIK-LDDGWVPLXILTKFNRLAKLTEDTDVIANALNKS 463
           Q+++YF D  L +D+FL++QI+   DG+V +  +  FN++ ++T+D  ++  A+  S
Sbjct: 32  QIDFYFSDSALLKDRFLKQQIENHPDGYVAISTIASFNKIKQMTDDIKLVKKAMKLS 88


>SB_7622| Best HMM Match : Arfaptin (HMM E-Value=0)
          Length = 641

 Score = 32.3 bits (70), Expect = 0.31
 Identities = 31/93 (33%), Positives = 42/93 (45%), Gaps = 2/93 (2%)
 Frame = +2

Query: 20  WGNNS--IKHVFFNFKSYFFKIVWPYLAIS*LRSLNKLVF*NQKVFSIKESHRVIPEIKM 193
           W N S  +  V   FK Y      P      L+SLN LV  N+K   IKE H    + + 
Sbjct: 269 WENTSKSMNQVAEQFKGY------PSYQFQMLKSLNPLVTDNEKNDEIKEVHL---DQET 319

Query: 194 TEDKEVTVETNGQEENAKTENSEDETELDIAII 292
             DK+ T E  G+   AK  N +D+ + D  +I
Sbjct: 320 HVDKKDT-ENAGEATEAKRSNDDDDDDDDDTLI 351


>SB_30685| Best HMM Match : RRM_1 (HMM E-Value=2e-07)
          Length = 349

 Score = 31.1 bits (67), Expect = 0.71
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +3

Query: 501 KVRRNPXQPLPEMNDELRKEICNRSXYAKGFAK 599
           KVRR   +P+ E+  E R++   ++ Y KGF K
Sbjct: 57  KVRRTKSKPVEELTTEARQKAKAKTVYVKGFPK 89


>SB_13703| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1358

 Score = 31.1 bits (67), Expect = 0.71
 Identities = 16/59 (27%), Positives = 33/59 (55%)
 Frame = +2

Query: 137 NQKVFSIKESHRVIPEIKMTEDKEVTVETNGQEENAKTENSEDETELDIAIIRQVEYYF 313
           N+K  S  +  R   + ++   +E+ +E   + ENA+ +  E+E E ++A+ ++VE  F
Sbjct: 59  NEKELSYIQEWRSKAKAEIQPFREMRLEIKKRLENARDQEKEEEMEKELAMKKKVERRF 117


>SB_39376| Best HMM Match : Alpha-amylase_C (HMM E-Value=0.49)
          Length = 679

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 26/90 (28%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
 Frame = +2

Query: 191 MTEDKEVTVETNGQEENAKTENSEDETELDIAIIRQVEYYFGDVNLHRDKFL-QEQIKLD 367
           M E+K+ T+  NGQE N +  N+E E + +   ++   YYF D   +   F+  E     
Sbjct: 21  MEEEKQHTLRANGQENN-EGNNAEGEDKDNTPPLK--PYYFWDP--YEAAFMATEPAYTV 75

Query: 368 DGWVPLXILTKFNRLAKLTEDTDVIANALN 457
           D +  +     F  L  +    D+I NA+N
Sbjct: 76  DKYARIYFPVTFAVLNSIYWIVDIIRNAVN 105


>SB_40168| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1554

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = +2

Query: 140 QKVFSIKESHRVIPEIKMTEDKEVTVETNGQEENAKTENSEDETELD 280
           ++V   +E   V  E +  E+KE  +E   +EE  + E  E+E E D
Sbjct: 39  EEVEKEEEEEEVEEEEEEEEEKEDEIEVEEEEEEKENEEEENEDEED 85


>SB_33399| Best HMM Match : Ank (HMM E-Value=0)
          Length = 1416

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +2

Query: 188 KMTEDKEVTVETNGQEENAKTENSEDE 268
           K+T+DK+V  E    EE  K E+  D+
Sbjct: 742 KLTQDKDVETENKNNEEKEKLEDDADQ 768


>SB_52656| Best HMM Match : ABC_tran (HMM E-Value=0)
          Length = 1321

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = +2

Query: 158  KESHRVIPEIKMTEDKEVTVETNGQEENAKTENSEDETELD 280
            ++++ V P+ +   D E      GQE   +T + ED+T +D
Sbjct: 1148 EDTNGVRPDDEPLHDDEQDPNVAGQERGGRTNDEEDDTSVD 1188


>SB_21866| Best HMM Match : UCH (HMM E-Value=0)
          Length = 2165

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 15/61 (24%), Positives = 31/61 (50%)
 Frame = +2

Query: 161  ESHRVIPEIKMTEDKEVTVETNGQEENAKTENSEDETELDIAIIRQVEYYFGDVNLHRDK 340
            ES   I     +E+    +ET G E   K   ++++    + ++RQ++Y FG ++  + +
Sbjct: 1307 ESESTIDTGYHSEESSKDLETQGGEARDK---AQEQKNYQVNVLRQIQYIFGHLSQSQLQ 1363

Query: 341  F 343
            F
Sbjct: 1364 F 1364


>SB_1572| Best HMM Match : Drf_FH1 (HMM E-Value=0.27)
          Length = 335

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +1

Query: 379 PIXNSHKIQSPCQTDRGHRCHRKCP 453
           P+   H+I   C+  + HR  ++CP
Sbjct: 84  PVTQDHRIPKRCRVTQDHRIPKRCP 108


>SB_32578| Best HMM Match : Methyltransf_2 (HMM E-Value=2.2e-17)
          Length = 298

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +2

Query: 344 LQEQIKLD-DGWVPLXILTKFNRLAKLTEDTDVIANALNK 460
           L+   KLD +G+V    LTK+ R+  L   T  IA A+NK
Sbjct: 106 LRGSSKLDAEGFVTAFDLTKYKRICDLGGATGEIAQAVNK 145


>SB_12468| Best HMM Match : zf-C2H2 (HMM E-Value=9.8e-30)
          Length = 824

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = +2

Query: 185 IKMTEDKEVTVETNGQEENAKTENSEDE 268
           IK T    +  E+NG E NA  E+SEDE
Sbjct: 576 IKDTGMCNLAEESNGSESNATQEDSEDE 603


>SB_44626| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 77

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -2

Query: 82  DNFKEIAFKVEKHVFNTIVPPRGFLRN 2
           D    +   V KH+F+ ++ PRG LRN
Sbjct: 29  DPLSAVDSHVGKHIFDKVIGPRGKLRN 55


>SB_36385| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1308

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -2

Query: 82  DNFKEIAFKVEKHVFNTIVPPRGFLRN 2
           D    +   V KH+F+ ++ PRG LRN
Sbjct: 425 DPLSAVDSHVGKHIFDKVIGPRGKLRN 451


>SB_49900| Best HMM Match : GETHR (HMM E-Value=5e-18)
          Length = 1044

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 13/53 (24%), Positives = 26/53 (49%)
 Frame = +2

Query: 146 VFSIKESHRVIPEIKMTEDKEVTVETNGQEENAKTENSEDETELDIAIIRQVE 304
           + S+KE+HR    I +T  KE   E    +  +  E   ++  +DI  +++ +
Sbjct: 582 ITSLKETHREDRAIDITSLKETQREDRAIDMTSLKETQREDRAIDITSLKETQ 634



 Score = 27.5 bits (58), Expect = 8.8
 Identities = 13/53 (24%), Positives = 26/53 (49%)
 Frame = +2

Query: 146 VFSIKESHRVIPEIKMTEDKEVTVETNGQEENAKTENSEDETELDIAIIRQVE 304
           + S+KE+HR    I MT  KE   E    +  +  E   ++  +D+  +++ +
Sbjct: 747 ITSLKETHREDRAIDMTSLKETQREDRAIDITSLKETQREDRAIDMTSLKETQ 799


>SB_41386| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 391

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 9/41 (21%), Positives = 24/41 (58%)
 Frame = +2

Query: 140 QKVFSIKESHRVIPEIKMTEDKEVTVETNGQEENAKTENSE 262
           Q+ +    +HR +P I+ +E+  +  E + +++  + EN++
Sbjct: 71  QRTYPSWHAHREVPAIRKSEESSLEDEEDDEDDEEEKENTD 111


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,877,581
Number of Sequences: 59808
Number of extensions: 284553
Number of successful extensions: 1447
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1059
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1352
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1451595000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)