Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP03_F_C08
(599 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X13697-1|CAA31985.1| 408|Homo sapiens protein ( Human mRNA for ... 103 4e-22
J04205-1|AAA51885.1| 408|Homo sapiens La protein protein. 103 4e-22
BT009862-1|AAP88864.1| 408|Homo sapiens Sjogren syndrome antige... 103 4e-22
BC020818-1|AAH20818.1| 408|Homo sapiens Sjogren syndrome antige... 103 4e-22
BC001289-1|AAH01289.1| 408|Homo sapiens Sjogren syndrome antige... 103 4e-22
AC009967-1|AAY14868.1| 408|Homo sapiens unknown protein. 103 4e-22
BC066945-1|AAH66945.1| 582|Homo sapiens LARP7 protein protein. 69 1e-11
DQ185046-1|ABD14426.1| 48|Homo sapiens Sjogren syndrome antige... 65 2e-10
BC014018-1|AAH14018.1| 491|Homo sapiens La ribonucleoprotein do... 56 1e-07
BC009446-1|AAH09446.1| 491|Homo sapiens La ribonucleoprotein do... 56 1e-07
BC006082-1|AAH06082.1| 491|Homo sapiens La ribonucleoprotein do... 56 1e-07
AF443829-1|AAN76711.1| 491|Homo sapiens acheron protein. 56 1e-07
AF443828-1|AAN76710.1| 491|Homo sapiens acheron protein. 56 1e-07
AK002058-1|BAA92061.1| 491|Homo sapiens protein ( Homo sapiens ... 52 2e-06
BC001460-1|AAH01460.2| 1019|Homo sapiens La ribonucleoprotein do... 52 2e-06
AK091465-1|BAC03668.1| 816|Homo sapiens protein ( Homo sapiens ... 52 2e-06
AB018274-1|BAA34451.1| 1096|Homo sapiens KIAA0731 protein protein. 52 2e-06
BC110300-1|AAI10301.1| 335|Homo sapiens LARP2 protein protein. 51 3e-06
AK001240-1|BAA91576.1| 328|Homo sapiens protein ( Homo sapiens ... 50 6e-06
AK092764-1|BAC03970.1| 575|Homo sapiens protein ( Homo sapiens ... 50 8e-06
M20328-1|AAA36577.1| 355|Homo sapiens protein ( Human ribonucle... 45 2e-04
BC063479-1|AAH63479.1| 374|Homo sapiens LARP4 protein protein. 40 0.005
BC022377-1|AAH22377.1| 188|Homo sapiens LARP4 protein protein. 40 0.005
AY004310-1|AAF86614.1| 375|Homo sapiens c-Mpl binding protein p... 40 0.005
AK125113-1|BAC86052.1| 654|Homo sapiens protein ( Homo sapiens ... 40 0.005
D86971-1|BAA13207.2| 751|Homo sapiens KIAA0217 protein. 37 0.062
BC131630-1|AAI31631.1| 738|Homo sapiens La ribonucleoprotein do... 37 0.062
AL359878-4|CAI13663.2| 738|Homo sapiens La ribonucleoprotein do... 37 0.062
AL157709-4|CAI39596.2| 738|Homo sapiens La ribonucleoprotein do... 37 0.062
L34363-1|AAA20872.1| 1298|Homo sapiens X-linked nuclear protein ... 31 4.1
Y12777-1|CAA73314.1| 670|Homo sapiens acyl-CoA synthetase-like ... 30 5.4
M35261-1|AAA36652.1| 27|Homo sapiens protein ( Human SS-B/La p... 30 5.4
BC034959-1|AAH34959.1| 670|Homo sapiens acyl-CoA synthetase lon... 30 5.4
AY528411-1|AAS18315.1| 1212|Homo sapiens G protein coupled recep... 30 5.4
AL355587-1|CAI15725.1| 1215|Homo sapiens novel protein protein. 30 5.4
AL161654-1|CAI16106.1| 1215|Homo sapiens novel protein protein. 30 5.4
AL139821-1|CAI16833.1| 1215|Homo sapiens novel protein protein. 30 5.4
AL138968-1|CAI42036.1| 670|Homo sapiens acyl-CoA synthetase lon... 30 5.4
AL118496-1|CAI42299.1| 670|Homo sapiens acyl-CoA synthetase lon... 30 5.4
AF030555-1|AAC17493.1| 670|Homo sapiens acyl-CoA synthetase 4 p... 30 5.4
AB061714-1|BAB86901.1| 670|Homo sapiens Acyl-CoA synthetase 4 p... 30 5.4
AB061713-1|BAB86900.1| 670|Homo sapiens Acyl-CoA synthetase 4 p... 30 5.4
AB061711-1|BAB88649.1| 670|Homo sapiens Acyl-CoA synthetase 4 p... 30 5.4
AB032962-1|BAA86450.2| 596|Homo sapiens KIAA1136 protein protein. 30 5.4
>X13697-1|CAA31985.1| 408|Homo sapiens protein ( Human mRNA for
ribonucleoprotein SS-B/La. ).
Length = 408
Score = 103 bits (248), Expect = 4e-22
Identities = 49/87 (56%), Positives = 63/87 (72%)
Frame = +2
Query: 242 AKTENSEDETELDIAIIRQVEYYFGDVNLHRDKFLQEQIKLDDGWVPLXILTKFNRLAKL 421
A+ ++E L+ I Q+EYYFGD NL RDKFL+EQIKLD+GWVPL I+ KFNRL +L
Sbjct: 2 AENGDNEKMAALEAKICHQIEYYFGDFNLPRDKFLKEQIKLDEGWVPLEIMIKFNRLNRL 61
Query: 422 TEDTDVIANALNKSTSGLLEVSEXNKK 502
T D +VI AL+KS + L+E+SE K
Sbjct: 62 TTDFNVIVEALSKSKAELMEISEDKTK 88
Score = 45.2 bits (102), Expect = 2e-04
Identities = 17/31 (54%), Positives = 24/31 (77%)
Frame = +3
Query: 501 KVRRNPXQPLPEMNDELRKEICNRSXYAKGF 593
K+RR+P +PLPE+ DE + ++ NRS Y KGF
Sbjct: 88 KIRRSPSKPLPEVTDEYKNDVKNRSVYIKGF 118
>J04205-1|AAA51885.1| 408|Homo sapiens La protein protein.
Length = 408
Score = 103 bits (248), Expect = 4e-22
Identities = 49/87 (56%), Positives = 63/87 (72%)
Frame = +2
Query: 242 AKTENSEDETELDIAIIRQVEYYFGDVNLHRDKFLQEQIKLDDGWVPLXILTKFNRLAKL 421
A+ ++E L+ I Q+EYYFGD NL RDKFL+EQIKLD+GWVPL I+ KFNRL +L
Sbjct: 2 AENGDNEKMAALEAKICHQIEYYFGDFNLPRDKFLKEQIKLDEGWVPLEIMIKFNRLNRL 61
Query: 422 TEDTDVIANALNKSTSGLLEVSEXNKK 502
T D +VI AL+KS + L+E+SE K
Sbjct: 62 TTDFNVIVEALSKSKAELMEISEDKTK 88
Score = 45.2 bits (102), Expect = 2e-04
Identities = 17/31 (54%), Positives = 24/31 (77%)
Frame = +3
Query: 501 KVRRNPXQPLPEMNDELRKEICNRSXYAKGF 593
K+RR+P +PLPE+ DE + ++ NRS Y KGF
Sbjct: 88 KIRRSPSKPLPEVTDEYKNDVKNRSVYIKGF 118
>BT009862-1|AAP88864.1| 408|Homo sapiens Sjogren syndrome antigen B
(autoantigen La) protein.
Length = 408
Score = 103 bits (248), Expect = 4e-22
Identities = 49/87 (56%), Positives = 63/87 (72%)
Frame = +2
Query: 242 AKTENSEDETELDIAIIRQVEYYFGDVNLHRDKFLQEQIKLDDGWVPLXILTKFNRLAKL 421
A+ ++E L+ I Q+EYYFGD NL RDKFL+EQIKLD+GWVPL I+ KFNRL +L
Sbjct: 2 AENGDNEKMAALEAKICHQIEYYFGDFNLPRDKFLKEQIKLDEGWVPLEIMIKFNRLNRL 61
Query: 422 TEDTDVIANALNKSTSGLLEVSEXNKK 502
T D +VI AL+KS + L+E+SE K
Sbjct: 62 TTDFNVIVEALSKSKAELMEISEDKTK 88
Score = 45.2 bits (102), Expect = 2e-04
Identities = 17/31 (54%), Positives = 24/31 (77%)
Frame = +3
Query: 501 KVRRNPXQPLPEMNDELRKEICNRSXYAKGF 593
K+RR+P +PLPE+ DE + ++ NRS Y KGF
Sbjct: 88 KIRRSPSKPLPEVTDEYKNDVKNRSVYIKGF 118
>BC020818-1|AAH20818.1| 408|Homo sapiens Sjogren syndrome antigen B
(autoantigen La) protein.
Length = 408
Score = 103 bits (248), Expect = 4e-22
Identities = 49/87 (56%), Positives = 63/87 (72%)
Frame = +2
Query: 242 AKTENSEDETELDIAIIRQVEYYFGDVNLHRDKFLQEQIKLDDGWVPLXILTKFNRLAKL 421
A+ ++E L+ I Q+EYYFGD NL RDKFL+EQIKLD+GWVPL I+ KFNRL +L
Sbjct: 2 AENGDNEKMAALEAKICHQIEYYFGDFNLPRDKFLKEQIKLDEGWVPLEIMIKFNRLNRL 61
Query: 422 TEDTDVIANALNKSTSGLLEVSEXNKK 502
T D +VI AL+KS + L+E+SE K
Sbjct: 62 TTDFNVIVEALSKSKAELMEISEDKTK 88
Score = 45.2 bits (102), Expect = 2e-04
Identities = 17/31 (54%), Positives = 24/31 (77%)
Frame = +3
Query: 501 KVRRNPXQPLPEMNDELRKEICNRSXYAKGF 593
K+RR+P +PLPE+ DE + ++ NRS Y KGF
Sbjct: 88 KIRRSPSKPLPEVTDEYKNDVKNRSVYIKGF 118
>BC001289-1|AAH01289.1| 408|Homo sapiens Sjogren syndrome antigen B
(autoantigen La) protein.
Length = 408
Score = 103 bits (248), Expect = 4e-22
Identities = 49/87 (56%), Positives = 63/87 (72%)
Frame = +2
Query: 242 AKTENSEDETELDIAIIRQVEYYFGDVNLHRDKFLQEQIKLDDGWVPLXILTKFNRLAKL 421
A+ ++E L+ I Q+EYYFGD NL RDKFL+EQIKLD+GWVPL I+ KFNRL +L
Sbjct: 2 AENGDNEKMAALEAKICHQIEYYFGDFNLPRDKFLKEQIKLDEGWVPLEIMIKFNRLNRL 61
Query: 422 TEDTDVIANALNKSTSGLLEVSEXNKK 502
T D +VI AL+KS + L+E+SE K
Sbjct: 62 TTDFNVIVEALSKSKAELMEISEDKTK 88
Score = 45.2 bits (102), Expect = 2e-04
Identities = 17/31 (54%), Positives = 24/31 (77%)
Frame = +3
Query: 501 KVRRNPXQPLPEMNDELRKEICNRSXYAKGF 593
K+RR+P +PLPE+ DE + ++ NRS Y KGF
Sbjct: 88 KIRRSPSKPLPEVTDEYKNDVKNRSVYIKGF 118
>AC009967-1|AAY14868.1| 408|Homo sapiens unknown protein.
Length = 408
Score = 103 bits (248), Expect = 4e-22
Identities = 49/87 (56%), Positives = 63/87 (72%)
Frame = +2
Query: 242 AKTENSEDETELDIAIIRQVEYYFGDVNLHRDKFLQEQIKLDDGWVPLXILTKFNRLAKL 421
A+ ++E L+ I Q+EYYFGD NL RDKFL+EQIKLD+GWVPL I+ KFNRL +L
Sbjct: 2 AENGDNEKMAALEAKICHQIEYYFGDFNLPRDKFLKEQIKLDEGWVPLEIMIKFNRLNRL 61
Query: 422 TEDTDVIANALNKSTSGLLEVSEXNKK 502
T D +VI AL+KS + L+E+SE K
Sbjct: 62 TTDFNVIVEALSKSKAELMEISEDKTK 88
Score = 45.2 bits (102), Expect = 2e-04
Identities = 17/31 (54%), Positives = 24/31 (77%)
Frame = +3
Query: 501 KVRRNPXQPLPEMNDELRKEICNRSXYAKGF 593
K+RR+P +PLPE+ DE + ++ NRS Y KGF
Sbjct: 88 KIRRSPSKPLPEVTDEYKNDVKNRSVYIKGF 118
>BC066945-1|AAH66945.1| 582|Homo sapiens LARP7 protein protein.
Length = 582
Score = 69.3 bits (162), Expect = 1e-11
Identities = 35/91 (38%), Positives = 55/91 (60%), Gaps = 3/91 (3%)
Frame = +2
Query: 200 DKEVTVETNGQEENAKTENSEDETELDIA--IIRQVEYYFGDVNLHRDKFLQEQI-KLDD 370
++E +E E+ + E + + I +QV+++FGD NLH+D+FL+EQI K D
Sbjct: 7 NQEKVMEEESTEKKKEVEKKKRSRVKQVLADIAKQVDFWFGDANLHKDRFLREQIEKSRD 66
Query: 371 GWVPLXILTKFNRLAKLTEDTDVIANALNKS 463
G+V + +L FN++ KLT D +IA AL S
Sbjct: 67 GYVDISLLVSFNKMKKLTTDGKLIARALRSS 97
>DQ185046-1|ABD14426.1| 48|Homo sapiens Sjogren syndrome antigen B
protein.
Length = 48
Score = 64.9 bits (151), Expect = 2e-10
Identities = 28/47 (59%), Positives = 35/47 (74%)
Frame = +2
Query: 242 AKTENSEDETELDIAIIRQVEYYFGDVNLHRDKFLQEQIKLDDGWVP 382
A+ ++E L+ I Q+EYYFGD NL RDKFL+EQIKLD+GWVP
Sbjct: 2 AENGDNEKMAALEAKICHQIEYYFGDFNLPRDKFLKEQIKLDEGWVP 48
>BC014018-1|AAH14018.1| 491|Homo sapiens La ribonucleoprotein
domain family, member 6 protein.
Length = 491
Score = 55.6 bits (128), Expect = 1e-07
Identities = 30/92 (32%), Positives = 54/92 (58%), Gaps = 1/92 (1%)
Frame = +2
Query: 230 QEENAKTENSEDETELDIAIIRQVEYYFGDVNLHRDKFLQEQIKLDD-GWVPLXILTKFN 406
+ E+ + E + EL ++ Q+E+YF D NL +D FL + ++ + G+V + +LT F
Sbjct: 77 EREDLEQEWKPPDEELIKKLVDQIEFYFSDENLEKDAFLLKHVRRNKLGYVSVKLLTSFK 136
Query: 407 RLAKLTEDTDVIANALNKSTSGLLEVSEXNKK 502
++ LT D A+AL S +LE++E ++K
Sbjct: 137 KVKHLTRDWRTTAHALKYSV--VLELNEDHRK 166
>BC009446-1|AAH09446.1| 491|Homo sapiens La ribonucleoprotein
domain family, member 6 protein.
Length = 491
Score = 55.6 bits (128), Expect = 1e-07
Identities = 30/92 (32%), Positives = 54/92 (58%), Gaps = 1/92 (1%)
Frame = +2
Query: 230 QEENAKTENSEDETELDIAIIRQVEYYFGDVNLHRDKFLQEQIKLDD-GWVPLXILTKFN 406
+ E+ + E + EL ++ Q+E+YF D NL +D FL + ++ + G+V + +LT F
Sbjct: 77 EREDLEQEWKPPDEELIKKLVDQIEFYFSDENLEKDAFLLKHVRRNKLGYVSVKLLTSFK 136
Query: 407 RLAKLTEDTDVIANALNKSTSGLLEVSEXNKK 502
++ LT D A+AL S +LE++E ++K
Sbjct: 137 KVKHLTRDWRTTAHALKYSV--VLELNEDHRK 166
>BC006082-1|AAH06082.1| 491|Homo sapiens La ribonucleoprotein
domain family, member 6 protein.
Length = 491
Score = 55.6 bits (128), Expect = 1e-07
Identities = 30/92 (32%), Positives = 54/92 (58%), Gaps = 1/92 (1%)
Frame = +2
Query: 230 QEENAKTENSEDETELDIAIIRQVEYYFGDVNLHRDKFLQEQIKLDD-GWVPLXILTKFN 406
+ E+ + E + EL ++ Q+E+YF D NL +D FL + ++ + G+V + +LT F
Sbjct: 77 EREDLEQEWKPPDEELIKKLVDQIEFYFSDENLEKDAFLLKHVRRNKLGYVSVKLLTSFK 136
Query: 407 RLAKLTEDTDVIANALNKSTSGLLEVSEXNKK 502
++ LT D A+AL S +LE++E ++K
Sbjct: 137 KVKHLTRDWRTTAHALKYSV--VLELNEDHRK 166
>AF443829-1|AAN76711.1| 491|Homo sapiens acheron protein.
Length = 491
Score = 55.6 bits (128), Expect = 1e-07
Identities = 30/92 (32%), Positives = 54/92 (58%), Gaps = 1/92 (1%)
Frame = +2
Query: 230 QEENAKTENSEDETELDIAIIRQVEYYFGDVNLHRDKFLQEQIKLDD-GWVPLXILTKFN 406
+ E+ + E + EL ++ Q+E+YF D NL +D FL + ++ + G+V + +LT F
Sbjct: 77 EREDLEQEWKPPDEELIKKLVDQIEFYFSDENLEKDAFLLKHVRRNKLGYVSVKLLTSFK 136
Query: 407 RLAKLTEDTDVIANALNKSTSGLLEVSEXNKK 502
++ LT D A+AL S +LE++E ++K
Sbjct: 137 KVKHLTRDWRTTAHALKYSV--VLELNEDHRK 166
>AF443828-1|AAN76710.1| 491|Homo sapiens acheron protein.
Length = 491
Score = 55.6 bits (128), Expect = 1e-07
Identities = 30/92 (32%), Positives = 54/92 (58%), Gaps = 1/92 (1%)
Frame = +2
Query: 230 QEENAKTENSEDETELDIAIIRQVEYYFGDVNLHRDKFLQEQIKLDD-GWVPLXILTKFN 406
+ E+ + E + EL ++ Q+E+YF D NL +D FL + ++ + G+V + +LT F
Sbjct: 77 EREDLEQEWKPPDEELIKKLVDQIEFYFSDENLEKDAFLLKHVRRNKLGYVSVKLLTSFK 136
Query: 407 RLAKLTEDTDVIANALNKSTSGLLEVSEXNKK 502
++ LT D A+AL S +LE++E ++K
Sbjct: 137 KVKHLTRDWRTTAHALKYSV--VLELNEDHRK 166
>AK002058-1|BAA92061.1| 491|Homo sapiens protein ( Homo sapiens
cDNA FLJ11196 fis, clone PLACE1007688, weakly similar to
LA PROTEIN HOMOLOG. ).
Length = 491
Score = 52.0 bits (119), Expect = 2e-06
Identities = 29/92 (31%), Positives = 53/92 (57%), Gaps = 1/92 (1%)
Frame = +2
Query: 230 QEENAKTENSEDETELDIAIIRQVEYYFGDVNLHRDKFLQEQIKLDD-GWVPLXILTKFN 406
+ E+ + E + EL ++ Q+E+ F D NL +D FL + ++ + G+V + +LT F
Sbjct: 77 EREDLEQEWKPPDEELIKKLVDQIEFCFSDENLEKDAFLLKHVRRNKLGYVSVKLLTSFK 136
Query: 407 RLAKLTEDTDVIANALNKSTSGLLEVSEXNKK 502
++ LT D A+AL S +LE++E ++K
Sbjct: 137 KVKHLTRDWRTTAHALKYSV--VLELNEDHRK 166
>BC001460-1|AAH01460.2| 1019|Homo sapiens La ribonucleoprotein
domain family, member 1 protein.
Length = 1019
Score = 51.6 bits (118), Expect = 2e-06
Identities = 28/69 (40%), Positives = 41/69 (59%)
Frame = +2
Query: 257 SEDETELDIAIIRQVEYYFGDVNLHRDKFLQEQIKLDDGWVPLXILTKFNRLAKLTEDTD 436
S D+ L I RQ+EYYF NL RD FL+ ++ DG++P+ ++ F+R+ LT D
Sbjct: 320 SVDQELLKDYIKRQIEYYFSVDNLERDFFLRRKMDA-DGFLPITLIASFHRVQALTTDIS 378
Query: 437 VIANALNKS 463
+I AL S
Sbjct: 379 LIFAALKDS 387
>AK091465-1|BAC03668.1| 816|Homo sapiens protein ( Homo sapiens
cDNA FLJ34146 fis, clone FCBBF3011889, weakly similar to
Drosophila melanogaster La related protein (larp) mRNA.
).
Length = 816
Score = 51.6 bits (118), Expect = 2e-06
Identities = 28/69 (40%), Positives = 41/69 (59%)
Frame = +2
Query: 257 SEDETELDIAIIRQVEYYFGDVNLHRDKFLQEQIKLDDGWVPLXILTKFNRLAKLTEDTD 436
S D+ L I RQ+EYYF NL RD FL+ ++ DG++P+ ++ F+R+ LT D
Sbjct: 397 SVDQELLKDYIKRQIEYYFSVDNLERDFFLRRKMDA-DGFLPITLIASFHRVQALTTDIS 455
Query: 437 VIANALNKS 463
+I AL S
Sbjct: 456 LIFAALKDS 464
>AB018274-1|BAA34451.1| 1096|Homo sapiens KIAA0731 protein protein.
Length = 1096
Score = 51.6 bits (118), Expect = 2e-06
Identities = 28/69 (40%), Positives = 41/69 (59%)
Frame = +2
Query: 257 SEDETELDIAIIRQVEYYFGDVNLHRDKFLQEQIKLDDGWVPLXILTKFNRLAKLTEDTD 436
S D+ L I RQ+EYYF NL RD FL+ ++ DG++P+ ++ F+R+ LT D
Sbjct: 397 SVDQELLKDYIKRQIEYYFSVDNLERDFFLRRKMDA-DGFLPITLIASFHRVQALTTDIS 455
Query: 437 VIANALNKS 463
+I AL S
Sbjct: 456 LIFAALKDS 464
>BC110300-1|AAI10301.1| 335|Homo sapiens LARP2 protein protein.
Length = 335
Score = 51.2 bits (117), Expect = 3e-06
Identities = 29/82 (35%), Positives = 46/82 (56%)
Frame = +2
Query: 263 DETELDIAIIRQVEYYFGDVNLHRDKFLQEQIKLDDGWVPLXILTKFNRLAKLTEDTDVI 442
+E L I RQ+EYYF NL RD FL+ ++ + G++P+ ++ F R+ LT + ++I
Sbjct: 211 EEALLKEYIKRQIEYYFSVENLERDFFLRGKMD-EQGFLPISLIAGFQRVQALTTNLNLI 269
Query: 443 ANALNKSTSGLLEVSEXNKKSE 508
AL ST + + KK E
Sbjct: 270 LEALKDSTEVEIVDEKMRKKIE 291
>AK001240-1|BAA91576.1| 328|Homo sapiens protein ( Homo sapiens
cDNA FLJ10378 fis, clone NT2RM2002004, weakly similar to
LA PROTEIN HOMOLOG. ).
Length = 328
Score = 50.0 bits (114), Expect = 6e-06
Identities = 28/82 (34%), Positives = 47/82 (57%)
Frame = +2
Query: 263 DETELDIAIIRQVEYYFGDVNLHRDKFLQEQIKLDDGWVPLXILTKFNRLAKLTEDTDVI 442
+E L I RQ+EYYF NL RD FL+ ++ + G++P+ ++ F R+ LT + ++I
Sbjct: 17 EEALLKEYIKRQIEYYFSVENLERDFFLRGKMD-EQGFLPISLIAGFQRVQALTTNLNLI 75
Query: 443 ANALNKSTSGLLEVSEXNKKSE 508
AL ST +E+ + + E
Sbjct: 76 LEALKDSTE--VEIVDEKMRKE 95
>AK092764-1|BAC03970.1| 575|Homo sapiens protein ( Homo sapiens
cDNA FLJ35445 fis, clone SMINT2003551, weakly similar to
Drosophila melanogaster La related protein (larp) mRNA.
).
Length = 575
Score = 49.6 bits (113), Expect = 8e-06
Identities = 28/82 (34%), Positives = 45/82 (54%)
Frame = +2
Query: 263 DETELDIAIIRQVEYYFGDVNLHRDKFLQEQIKLDDGWVPLXILTKFNRLAKLTEDTDVI 442
+E L I RQ+EYYF NL RD FL+ ++ + G++P+ ++ F R+ LT + ++I
Sbjct: 164 EEALLKEYIKRQIEYYFSVENLERDFFLRGKMD-EQGFLPISLIAGFQRVQALTTNLNLI 222
Query: 443 ANALNKSTSGLLEVSEXNKKSE 508
L ST + + KK E
Sbjct: 223 LEVLKDSTEVEIVDEKMRKKIE 244
>M20328-1|AAA36577.1| 355|Homo sapiens protein ( Human
ribonucleoprotein (La) mRNA, 3' end. ).
Length = 355
Score = 45.2 bits (102), Expect = 2e-04
Identities = 17/31 (54%), Positives = 24/31 (77%)
Frame = +3
Query: 501 KVRRNPXQPLPEMNDELRKEICNRSXYAKGF 593
K+RR+P +PLPE+ DE + ++ NRS Y KGF
Sbjct: 35 KIRRSPSKPLPEVTDEYKNDVKNRSVYIKGF 65
Score = 38.3 bits (85), Expect = 0.020
Identities = 18/35 (51%), Positives = 25/35 (71%)
Frame = +2
Query: 398 KFNRLAKLTEDTDVIANALNKSTSGLLEVSEXNKK 502
+FNRL +LT D +VI AL+KS + L+E+SE K
Sbjct: 1 EFNRLNRLTTDFNVIVEALSKSKAELMEISEDKTK 35
>BC063479-1|AAH63479.1| 374|Homo sapiens LARP4 protein protein.
Length = 374
Score = 40.3 bits (90), Expect = 0.005
Identities = 26/84 (30%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Frame = +2
Query: 254 NSEDETE-LDIAIIRQVEYYFGDVNLHRDKFLQEQIKLDDGWVPLXILTKFNRLAKLTED 430
NS TE L + +Q+E+ F NL +D +L Q+ D ++P+ + + KLT D
Sbjct: 111 NSAVSTEDLKECLKKQLEFCFSRENLSKDLYLISQMDSDQ-FIPIWTVANMEEIKKLTTD 169
Query: 431 TDVIANALNKSTSGLLEVSEXNKK 502
D+I L +S +++V E +K
Sbjct: 170 PDLILEVLR--SSPMVQVDEKGEK 191
>BC022377-1|AAH22377.1| 188|Homo sapiens LARP4 protein protein.
Length = 188
Score = 40.3 bits (90), Expect = 0.005
Identities = 26/84 (30%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Frame = +2
Query: 254 NSEDETE-LDIAIIRQVEYYFGDVNLHRDKFLQEQIKLDDGWVPLXILTKFNRLAKLTED 430
NS TE L + +Q+E+ F NL +D +L Q+ D ++P+ + + KLT D
Sbjct: 41 NSAVSTEDLKECLKKQLEFCFSRENLSKDLYLISQMDSDQ-FIPIWTVANMEEIKKLTTD 99
Query: 431 TDVIANALNKSTSGLLEVSEXNKK 502
D+I L +S +++V E +K
Sbjct: 100 PDLILEVLR--SSPMVQVDEKGEK 121
>AY004310-1|AAF86614.1| 375|Homo sapiens c-Mpl binding protein
protein.
Length = 375
Score = 40.3 bits (90), Expect = 0.005
Identities = 26/84 (30%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Frame = +2
Query: 254 NSEDETE-LDIAIIRQVEYYFGDVNLHRDKFLQEQIKLDDGWVPLXILTKFNRLAKLTED 430
NS TE L + +Q+E+ F NL +D +L Q+ D ++P+ + + KLT D
Sbjct: 41 NSAVSTEDLKECLKKQLEFCFSRENLSKDLYLISQMDSDQ-FIPIWTVANMEEIKKLTTD 99
Query: 431 TDVIANALNKSTSGLLEVSEXNKK 502
D+I L +S +++V E +K
Sbjct: 100 PDLILEVLR--SSPMVQVDEKGEK 121
>AK125113-1|BAC86052.1| 654|Homo sapiens protein ( Homo sapiens
cDNA FLJ43123 fis, clone CTONG3003972. ).
Length = 654
Score = 40.3 bits (90), Expect = 0.005
Identities = 26/84 (30%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Frame = +2
Query: 254 NSEDETE-LDIAIIRQVEYYFGDVNLHRDKFLQEQIKLDDGWVPLXILTKFNRLAKLTED 430
NS TE L + +Q+E+ F NL +D +L Q+ D ++P+ + + KLT D
Sbjct: 41 NSAVSTEDLKECLKKQLEFCFSRENLSKDLYLISQMDSDQ-FIPIWTVANMEEIKKLTTD 99
Query: 431 TDVIANALNKSTSGLLEVSEXNKK 502
D+I L +S +++V E +K
Sbjct: 100 PDLILEVLR--SSPMVQVDEKGEK 121
>D86971-1|BAA13207.2| 751|Homo sapiens KIAA0217 protein.
Length = 751
Score = 36.7 bits (81), Expect = 0.062
Identities = 26/95 (27%), Positives = 48/95 (50%)
Frame = +2
Query: 218 ETNGQEENAKTENSEDETELDIAIIRQVEYYFGDVNLHRDKFLQEQIKLDDGWVPLXILT 397
ET G E ++ ++ ED E+ + + +E+ NL D +L Q+ D +VP+ +
Sbjct: 155 ETGGNE--SQPDSQEDPREV---LKKTLEFCLSRENLASDMYLISQMDSDQ-YVPITTVA 208
Query: 398 KFNRLAKLTEDTDVIANALNKSTSGLLEVSEXNKK 502
+ + KL+ D D+I L + L++V E +K
Sbjct: 209 NLDHIKKLSTDVDLIVEVLR--SLPLVQVDEKGEK 241
>BC131630-1|AAI31631.1| 738|Homo sapiens La ribonucleoprotein
domain family, member 5 protein.
Length = 738
Score = 36.7 bits (81), Expect = 0.062
Identities = 26/95 (27%), Positives = 48/95 (50%)
Frame = +2
Query: 218 ETNGQEENAKTENSEDETELDIAIIRQVEYYFGDVNLHRDKFLQEQIKLDDGWVPLXILT 397
ET G E ++ ++ ED E+ + + +E+ NL D +L Q+ D +VP+ +
Sbjct: 142 ETGGNE--SQPDSQEDPREV---LKKTLEFCLSRENLASDMYLISQMDSDQ-YVPITTVA 195
Query: 398 KFNRLAKLTEDTDVIANALNKSTSGLLEVSEXNKK 502
+ + KL+ D D+I L + L++V E +K
Sbjct: 196 NLDHIKKLSTDVDLIVEVLR--SLPLVQVDEKGEK 228
>AL359878-4|CAI13663.2| 738|Homo sapiens La ribonucleoprotein
domain family, member 5 protein.
Length = 738
Score = 36.7 bits (81), Expect = 0.062
Identities = 26/95 (27%), Positives = 48/95 (50%)
Frame = +2
Query: 218 ETNGQEENAKTENSEDETELDIAIIRQVEYYFGDVNLHRDKFLQEQIKLDDGWVPLXILT 397
ET G E ++ ++ ED E+ + + +E+ NL D +L Q+ D +VP+ +
Sbjct: 142 ETGGNE--SQPDSQEDPREV---LKKTLEFCLSRENLASDMYLISQMDSDQ-YVPITTVA 195
Query: 398 KFNRLAKLTEDTDVIANALNKSTSGLLEVSEXNKK 502
+ + KL+ D D+I L + L++V E +K
Sbjct: 196 NLDHIKKLSTDVDLIVEVLR--SLPLVQVDEKGEK 228
>AL157709-4|CAI39596.2| 738|Homo sapiens La ribonucleoprotein
domain family, member 5 protein.
Length = 738
Score = 36.7 bits (81), Expect = 0.062
Identities = 26/95 (27%), Positives = 48/95 (50%)
Frame = +2
Query: 218 ETNGQEENAKTENSEDETELDIAIIRQVEYYFGDVNLHRDKFLQEQIKLDDGWVPLXILT 397
ET G E ++ ++ ED E+ + + +E+ NL D +L Q+ D +VP+ +
Sbjct: 142 ETGGNE--SQPDSQEDPREV---LKKTLEFCLSRENLASDMYLISQMDSDQ-YVPITTVA 195
Query: 398 KFNRLAKLTEDTDVIANALNKSTSGLLEVSEXNKK 502
+ + KL+ D D+I L + L++V E +K
Sbjct: 196 NLDHIKKLSTDVDLIVEVLR--SLPLVQVDEKGEK 228
>L34363-1|AAA20872.1| 1298|Homo sapiens X-linked nuclear protein
protein.
Length = 1298
Score = 30.7 bits (66), Expect = 4.1
Identities = 15/46 (32%), Positives = 25/46 (54%)
Frame = +2
Query: 137 NQKVFSIKESHRVIPEIKMTEDKEVTVETNGQEENAKTENSEDETE 274
NQ+++ K+ R IK+ ED ++N +EE + E E+E E
Sbjct: 295 NQRIYKQKKKRR---RIKVQEDSSSENKSNSEEEEEEKEEEEEEEE 337
>Y12777-1|CAA73314.1| 670|Homo sapiens acyl-CoA synthetase-like
protein protein.
Length = 670
Score = 30.3 bits (65), Expect = 5.4
Identities = 14/49 (28%), Positives = 27/49 (55%)
Frame = -3
Query: 567 CIFLYEARRSFLAVAVXDYVSLFLLXSETSNNPLVDLLRAFAMTSVSSV 421
C+ + + ++ + + +YVSL + + N PL+D + AFA + S V
Sbjct: 523 CLQIIDRKKDLVKLQAGEYVSLGKVEAALKNCPLIDNICAFAKSDQSYV 571
>M35261-1|AAA36652.1| 27|Homo sapiens protein ( Human SS-B/La
protein mRNA, partial cds. ).
Length = 27
Score = 30.3 bits (65), Expect = 5.4
Identities = 10/20 (50%), Positives = 16/20 (80%)
Frame = +3
Query: 501 KVRRNPXQPLPEMNDELRKE 560
K+RR+P +PLPE+ DE + +
Sbjct: 8 KIRRSPSKPLPEVTDEYKND 27
>BC034959-1|AAH34959.1| 670|Homo sapiens acyl-CoA synthetase
long-chain family member 4 protein.
Length = 670
Score = 30.3 bits (65), Expect = 5.4
Identities = 14/49 (28%), Positives = 27/49 (55%)
Frame = -3
Query: 567 CIFLYEARRSFLAVAVXDYVSLFLLXSETSNNPLVDLLRAFAMTSVSSV 421
C+ + + ++ + + +YVSL + + N PL+D + AFA + S V
Sbjct: 523 CLQIIDRKKDLVKLQAGEYVSLGKVEAALKNCPLIDNICAFAKSDQSYV 571
>AY528411-1|AAS18315.1| 1212|Homo sapiens G protein coupled receptor
158 protein.
Length = 1212
Score = 30.3 bits (65), Expect = 5.4
Identities = 15/43 (34%), Positives = 25/43 (58%)
Frame = +2
Query: 143 KVFSIKESHRVIPEIKMTEDKEVTVETNGQEENAKTENSEDET 271
+VFS+K+SH ++ ++ ++ T QEE TENS E+
Sbjct: 807 RVFSLKKSHSTYDHVRDQTEESSSLPTESQEEET-TENSTLES 848
>AL355587-1|CAI15725.1| 1215|Homo sapiens novel protein protein.
Length = 1215
Score = 30.3 bits (65), Expect = 5.4
Identities = 15/43 (34%), Positives = 25/43 (58%)
Frame = +2
Query: 143 KVFSIKESHRVIPEIKMTEDKEVTVETNGQEENAKTENSEDET 271
+VFS+K+SH ++ ++ ++ T QEE TENS E+
Sbjct: 810 RVFSLKKSHSTYDHVRDQTEESSSLPTESQEEET-TENSTLES 851
>AL161654-1|CAI16106.1| 1215|Homo sapiens novel protein protein.
Length = 1215
Score = 30.3 bits (65), Expect = 5.4
Identities = 15/43 (34%), Positives = 25/43 (58%)
Frame = +2
Query: 143 KVFSIKESHRVIPEIKMTEDKEVTVETNGQEENAKTENSEDET 271
+VFS+K+SH ++ ++ ++ T QEE TENS E+
Sbjct: 810 RVFSLKKSHSTYDHVRDQTEESSSLPTESQEEET-TENSTLES 851
>AL139821-1|CAI16833.1| 1215|Homo sapiens novel protein protein.
Length = 1215
Score = 30.3 bits (65), Expect = 5.4
Identities = 15/43 (34%), Positives = 25/43 (58%)
Frame = +2
Query: 143 KVFSIKESHRVIPEIKMTEDKEVTVETNGQEENAKTENSEDET 271
+VFS+K+SH ++ ++ ++ T QEE TENS E+
Sbjct: 810 RVFSLKKSHSTYDHVRDQTEESSSLPTESQEEET-TENSTLES 851
>AL138968-1|CAI42036.1| 670|Homo sapiens acyl-CoA synthetase
long-chain family member 4 protein.
Length = 670
Score = 30.3 bits (65), Expect = 5.4
Identities = 14/49 (28%), Positives = 27/49 (55%)
Frame = -3
Query: 567 CIFLYEARRSFLAVAVXDYVSLFLLXSETSNNPLVDLLRAFAMTSVSSV 421
C+ + + ++ + + +YVSL + + N PL+D + AFA + S V
Sbjct: 523 CLQIIDRKKDLVKLQAGEYVSLGKVEAALKNCPLIDNICAFAKSDQSYV 571
>AL118496-1|CAI42299.1| 670|Homo sapiens acyl-CoA synthetase
long-chain family member 4 protein.
Length = 670
Score = 30.3 bits (65), Expect = 5.4
Identities = 14/49 (28%), Positives = 27/49 (55%)
Frame = -3
Query: 567 CIFLYEARRSFLAVAVXDYVSLFLLXSETSNNPLVDLLRAFAMTSVSSV 421
C+ + + ++ + + +YVSL + + N PL+D + AFA + S V
Sbjct: 523 CLQIIDRKKDLVKLQAGEYVSLGKVEAALKNCPLIDNICAFAKSDQSYV 571
>AF030555-1|AAC17493.1| 670|Homo sapiens acyl-CoA synthetase 4
protein.
Length = 670
Score = 30.3 bits (65), Expect = 5.4
Identities = 14/49 (28%), Positives = 27/49 (55%)
Frame = -3
Query: 567 CIFLYEARRSFLAVAVXDYVSLFLLXSETSNNPLVDLLRAFAMTSVSSV 421
C+ + + ++ + + +YVSL + + N PL+D + AFA + S V
Sbjct: 523 CLQIIDRKKDLVKLQAGEYVSLGKVEAALKNCPLIDNICAFAKSDQSYV 571
>AB061714-1|BAB86901.1| 670|Homo sapiens Acyl-CoA synthetase 4
protein.
Length = 670
Score = 30.3 bits (65), Expect = 5.4
Identities = 14/49 (28%), Positives = 27/49 (55%)
Frame = -3
Query: 567 CIFLYEARRSFLAVAVXDYVSLFLLXSETSNNPLVDLLRAFAMTSVSSV 421
C+ + + ++ + + +YVSL + + N PL+D + AFA + S V
Sbjct: 523 CLQIIDRKKDLVKLQAGEYVSLGKVEAALKNCPLIDNICAFAKSDQSYV 571
>AB061713-1|BAB86900.1| 670|Homo sapiens Acyl-CoA synthetase 4
protein.
Length = 670
Score = 30.3 bits (65), Expect = 5.4
Identities = 14/49 (28%), Positives = 27/49 (55%)
Frame = -3
Query: 567 CIFLYEARRSFLAVAVXDYVSLFLLXSETSNNPLVDLLRAFAMTSVSSV 421
C+ + + ++ + + +YVSL + + N PL+D + AFA + S V
Sbjct: 523 CLQIIDRKKDLVKLQAGEYVSLGKVEAALKNCPLIDNICAFAKSDQSYV 571
>AB061711-1|BAB88649.1| 670|Homo sapiens Acyl-CoA synthetase 4
protein.
Length = 670
Score = 30.3 bits (65), Expect = 5.4
Identities = 14/49 (28%), Positives = 27/49 (55%)
Frame = -3
Query: 567 CIFLYEARRSFLAVAVXDYVSLFLLXSETSNNPLVDLLRAFAMTSVSSV 421
C+ + + ++ + + +YVSL + + N PL+D + AFA + S V
Sbjct: 523 CLQIIDRKKDLVKLQAGEYVSLGKVEAALKNCPLIDNICAFAKSDQSYV 571
>AB032962-1|BAA86450.2| 596|Homo sapiens KIAA1136 protein protein.
Length = 596
Score = 30.3 bits (65), Expect = 5.4
Identities = 15/43 (34%), Positives = 25/43 (58%)
Frame = +2
Query: 143 KVFSIKESHRVIPEIKMTEDKEVTVETNGQEENAKTENSEDET 271
+VFS+K+SH ++ ++ ++ T QEE TENS E+
Sbjct: 191 RVFSLKKSHSTYDHVRDQTEESSSLPTESQEEET-TENSTLES 232
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 72,251,711
Number of Sequences: 237096
Number of extensions: 1296884
Number of successful extensions: 4665
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 4206
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4556
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6297951520
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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