Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP03_F_C08
(599 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF003140-8|AAB54169.1| 396|Caenorhabditis elegans Hypothetical ... 101 3e-22
AF039718-5|AAP68905.1| 760|Caenorhabditis elegans Prion-like-(q... 53 2e-07
AF039718-4|AAP68906.2| 696|Caenorhabditis elegans Prion-like-(q... 53 2e-07
U23515-7|AAK93859.3| 868|Caenorhabditis elegans Larp (rna bindi... 52 4e-07
U23515-6|ABC71805.1| 1065|Caenorhabditis elegans Larp (rna bindi... 52 4e-07
AF003130-3|AAB54123.1| 849|Caenorhabditis elegans Hypothetical ... 33 0.21
AF078783-4|AAC26919.2| 87|Caenorhabditis elegans Hypothetical ... 31 0.83
Z19157-1|CAB63418.2| 733|Caenorhabditis elegans Hypothetical pr... 28 4.4
U00065-2|AAL27237.1| 672|Caenorhabditis elegans Prion-like-(q/n... 28 4.4
M14334-2|AAA28071.1| 145|Caenorhabditis elegans protein ( C.ele... 28 4.4
D86922-1|BAA13180.1| 733|Caenorhabditis elegans cyclic nucleoti... 28 4.4
AF067220-1|AAK84500.1| 1014|Caenorhabditis elegans Hypothetical ... 28 4.4
AF040657-4|AAB95053.1| 261|Caenorhabditis elegans Hypothetical ... 28 4.4
AC006774-1|AAF60615.1| 145|Caenorhabditis elegans Heat shock pr... 28 4.4
AC006607-6|AAF60370.2| 496|Caenorhabditis elegans Hypothetical ... 28 5.9
U97009-3|AAC69031.1| 619|Caenorhabditis elegans Hypothetical pr... 27 7.7
AF016654-1|AAB66028.1| 731|Caenorhabditis elegans Hypothetical ... 27 7.7
>AF003140-8|AAB54169.1| 396|Caenorhabditis elegans Hypothetical
protein C44E4.4 protein.
Length = 396
Score = 101 bits (243), Expect = 3e-22
Identities = 44/77 (57%), Positives = 61/77 (79%)
Frame = +2
Query: 272 ELDIAIIRQVEYYFGDVNLHRDKFLQEQIKLDDGWVPLXILTKFNRLAKLTEDTDVIANA 451
+ D II+Q+EYYFG++NL RDKFLQE++K DDGWVP+ + FNRLA +++DT+ IANA
Sbjct: 11 DADQKIIKQLEYYFGNINLPRDKFLQEKLKEDDGWVPITTMLNFNRLASISKDTEKIANA 70
Query: 452 LNKSTSGLLEVSEXNKK 502
+ S SG++ VSE N+K
Sbjct: 71 VKNSGSGIISVSEDNQK 87
Score = 33.1 bits (72), Expect = 0.16
Identities = 14/33 (42%), Positives = 23/33 (69%)
Frame = +3
Query: 498 KKVRRNPXQPLPEMNDELRKEICNRSXYAKGFA 596
+K+RRN P+PE + E ++I +R+ Y KGF+
Sbjct: 86 QKIRRNEENPVPENSLEYWQKIKHRTVYMKGFS 118
>AF039718-5|AAP68905.1| 760|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 64,
isoform a protein.
Length = 760
Score = 52.8 bits (121), Expect = 2e-07
Identities = 28/77 (36%), Positives = 47/77 (61%)
Frame = +2
Query: 272 ELDIAIIRQVEYYFGDVNLHRDKFLQEQIKLDDGWVPLXILTKFNRLAKLTEDTDVIANA 451
E+ + Q+EYYF NL D++L+ Q+ D +VP+ +L F ++ +LT D D+I A
Sbjct: 137 EIKQLLKNQLEYYFSRENLSSDRYLKCQMD-SDNYVPINVLAGFPKIMRLTTDVDLIVEA 195
Query: 452 LNKSTSGLLEVSEXNKK 502
L +ST+ +E+ E +K
Sbjct: 196 LKESTN--VELDEKFEK 210
>AF039718-4|AAP68906.2| 696|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 64,
isoform b protein.
Length = 696
Score = 52.8 bits (121), Expect = 2e-07
Identities = 28/77 (36%), Positives = 47/77 (61%)
Frame = +2
Query: 272 ELDIAIIRQVEYYFGDVNLHRDKFLQEQIKLDDGWVPLXILTKFNRLAKLTEDTDVIANA 451
E+ + Q+EYYF NL D++L+ Q+ D +VP+ +L F ++ +LT D D+I A
Sbjct: 39 EIKQLLKNQLEYYFSRENLSSDRYLKCQMD-SDNYVPINVLAGFPKIMRLTTDVDLIVEA 97
Query: 452 LNKSTSGLLEVSEXNKK 502
L +ST+ +E+ E +K
Sbjct: 98 LKESTN--VELDEKFEK 112
>U23515-7|AAK93859.3| 868|Caenorhabditis elegans Larp (rna binding
la related protein)homolog protein 1, isoform a protein.
Length = 868
Score = 51.6 bits (118), Expect = 4e-07
Identities = 23/58 (39%), Positives = 38/58 (65%)
Frame = +2
Query: 293 RQVEYYFGDVNLHRDKFLQEQIKLDDGWVPLXILTKFNRLAKLTEDTDVIANALNKST 466
+Q+EYYF + NL +D FL+ ++ +G++P+ ++ F R+ LTED +I AL ST
Sbjct: 329 KQIEYYFSEENLQKDFFLRRKMG-PEGYLPVALIASFPRVRSLTEDYSLILEALKDST 385
>U23515-6|ABC71805.1| 1065|Caenorhabditis elegans Larp (rna binding
la related protein)homolog protein 1, isoform b protein.
Length = 1065
Score = 51.6 bits (118), Expect = 4e-07
Identities = 23/58 (39%), Positives = 38/58 (65%)
Frame = +2
Query: 293 RQVEYYFGDVNLHRDKFLQEQIKLDDGWVPLXILTKFNRLAKLTEDTDVIANALNKST 466
+Q+EYYF + NL +D FL+ ++ +G++P+ ++ F R+ LTED +I AL ST
Sbjct: 526 KQIEYYFSEENLQKDFFLRRKMG-PEGYLPVALIASFPRVRSLTEDYSLILEALKDST 582
>AF003130-3|AAB54123.1| 849|Caenorhabditis elegans Hypothetical
protein F55A12.5 protein.
Length = 849
Score = 32.7 bits (71), Expect = 0.21
Identities = 29/106 (27%), Positives = 44/106 (41%), Gaps = 5/106 (4%)
Frame = +2
Query: 152 SIKESHRVIPEIKMTEDKEVTVETNGQEENAKTENSEDETELDIA-----IIRQVEYYFG 316
S +E + E + ED E E +EE + E+ + TE + II Q F
Sbjct: 673 SEEEEYEEEDEYEEYEDDEDEDEYYEEEEENEVEDDDFLTETQLEELMEQIILQTSVMFR 732
Query: 317 DVNLHRDKFLQEQIKLDDGWVPLXILTKFNRLAKLTEDTDVIANAL 454
D + + +E IK D +L +LAK+TE +N L
Sbjct: 733 DQRMKKFGLEKEMIKFDGATDEEILLQAEQKLAKITETLKTTSNKL 778
>AF078783-4|AAC26919.2| 87|Caenorhabditis elegans Hypothetical
protein H10E21.1 protein.
Length = 87
Score = 30.7 bits (66), Expect = 0.83
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +2
Query: 8 KKTAWGNNSIKHVFFNFKSYFFKIVWPYLA 97
++T W SI F NF+ +FF WP++A
Sbjct: 45 RRTTW-TQSICRFFRNFQFFFFAFSWPFIA 73
>Z19157-1|CAB63418.2| 733|Caenorhabditis elegans Hypothetical
protein ZC84.2 protein.
Length = 733
Score = 28.3 bits (60), Expect = 4.4
Identities = 16/67 (23%), Positives = 33/67 (49%)
Frame = -2
Query: 229 SIGFNSYLFVLGHFDFWNNTMRFFNGKYLLISENKFIEASKLRYSKVRPDNFKEIAFKVE 50
S+G+ LFVL D WN + + + LL+++ + I + P+ K + ++
Sbjct: 581 SVGYTD-LFVLSKTDLWNALREYPDARKLLLAKGREILKKDNLLDENAPEEQKTVE-EIA 638
Query: 49 KHVFNTI 29
+H+ N +
Sbjct: 639 EHLNNAV 645
>U00065-2|AAL27237.1| 672|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 25
protein.
Length = 672
Score = 28.3 bits (60), Expect = 4.4
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = -3
Query: 447 FAMTSVSSVSLARRLNFVRIXNGTHPSSNFICSCRNLSRCRFTSP-K*YSTCR 292
F TS SS +L V++ + P + + +C N S C+++S + Y CR
Sbjct: 613 FCTTSSSSSNLCSAGQTVQLDSSNQPINCLVSTCPNNSFCQYSSSGQRYVCCR 665
>M14334-2|AAA28071.1| 145|Caenorhabditis elegans protein (
C.elegans heat shockprotein genes 16-41 and 16-2,
complete cds, flanked byCeRep16 repetitive elements. ).
Length = 145
Score = 28.3 bits (60), Expect = 4.4
Identities = 17/53 (32%), Positives = 27/53 (50%)
Frame = +2
Query: 347 QEQIKLDDGWVPLXILTKFNRLAKLTEDTDVIANALNKSTSGLLEVSEXNKKS 505
++++K D G+ F+R+ L ED DV A A N S G L + K++
Sbjct: 78 EQELKTDHGYSK----KSFSRVILLPEDVDVGAVASNLSEDGKLSIEAPKKEA 126
>D86922-1|BAA13180.1| 733|Caenorhabditis elegans cyclic
nucleotide-gated channel protein.
Length = 733
Score = 28.3 bits (60), Expect = 4.4
Identities = 16/67 (23%), Positives = 33/67 (49%)
Frame = -2
Query: 229 SIGFNSYLFVLGHFDFWNNTMRFFNGKYLLISENKFIEASKLRYSKVRPDNFKEIAFKVE 50
S+G+ LFVL D WN + + + LL+++ + I + P+ K + ++
Sbjct: 581 SVGYTD-LFVLSKTDLWNALREYPDARKLLLAKGREILKKDNLLDENAPEEQKTVE-EIA 638
Query: 49 KHVFNTI 29
+H+ N +
Sbjct: 639 EHLNNAV 645
>AF067220-1|AAK84500.1| 1014|Caenorhabditis elegans Hypothetical
protein C33E10.6 protein.
Length = 1014
Score = 28.3 bits (60), Expect = 4.4
Identities = 26/98 (26%), Positives = 40/98 (40%), Gaps = 12/98 (12%)
Frame = -2
Query: 325 IYITKIIFDLPNNRNIQXXXXXXXXXFRV-------LLLSIGFNS-----YLFVLGHFDF 182
I+I+K +F++P NR + LL G +S Y+F F
Sbjct: 139 IHISKNMFNVPENRIVDLFLIMNVVDSHYCLVKNIKFLLGKGISSHAGAKYIFRYCFNSF 198
Query: 181 WNNTMRFFNGKYLLISENKFIEASKLRYSKVRPDNFKE 68
W+ T + L S+NK +E K Y + NFK+
Sbjct: 199 WSKTK--YENHLELCSKNKAVEYKKPNYDYIEFKNFKK 234
>AF040657-4|AAB95053.1| 261|Caenorhabditis elegans Hypothetical
protein T20H9.4 protein.
Length = 261
Score = 28.3 bits (60), Expect = 4.4
Identities = 23/69 (33%), Positives = 38/69 (55%), Gaps = 11/69 (15%)
Frame = +2
Query: 194 TEDKEVTVETNGQEENAKTENSEDETELDIAIIRQ----VEYY-FGD-----VNLHRDKF 343
TED TV NGQ++ + E ++ + D+A+I + +E Y GD V++ +D F
Sbjct: 52 TEDGGTTVHHNGQKKRIEGEQYKERSIKDLAVIFKHASILELYNLGDNVKLLVDILKDSF 111
Query: 344 LQ-EQIKLD 367
+ E IKL+
Sbjct: 112 IHVESIKLN 120
>AC006774-1|AAF60615.1| 145|Caenorhabditis elegans Heat shock
protein protein 16.2 protein.
Length = 145
Score = 28.3 bits (60), Expect = 4.4
Identities = 17/53 (32%), Positives = 27/53 (50%)
Frame = +2
Query: 347 QEQIKLDDGWVPLXILTKFNRLAKLTEDTDVIANALNKSTSGLLEVSEXNKKS 505
++++K D G+ F+R+ L ED DV A A N S G L + K++
Sbjct: 78 EQELKTDHGYSK----KSFSRVILLPEDVDVGAVASNLSEDGKLSIEAPKKEA 126
>AC006607-6|AAF60370.2| 496|Caenorhabditis elegans Hypothetical
protein C09E7.5 protein.
Length = 496
Score = 27.9 bits (59), Expect = 5.9
Identities = 12/39 (30%), Positives = 24/39 (61%)
Frame = +2
Query: 188 KMTEDKEVTVETNGQEENAKTENSEDETELDIAIIRQVE 304
K+TE ++ ETNG+ ++ + SE +EL+ + R+ +
Sbjct: 168 KLTESEKKLKETNGKVTKSRNQLSERVSELEAQLKREAD 206
>U97009-3|AAC69031.1| 619|Caenorhabditis elegans Hypothetical
protein T19H12.6 protein.
Length = 619
Score = 27.5 bits (58), Expect = 7.7
Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
Frame = -2
Query: 238 LLLSIG--FNSYLFVLGHFDFWNNTMRFFNGK 149
+LLS+G F S ++ F FWNN +R+F+ K
Sbjct: 540 VLLSLGDDFGSLIYSSSGF-FWNNKLRYFDVK 570
>AF016654-1|AAB66028.1| 731|Caenorhabditis elegans Hypothetical
protein C17A2.5 protein.
Length = 731
Score = 27.5 bits (58), Expect = 7.7
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +1
Query: 274 IGYCDYSASRILFW*CKSTS 333
+ YCDY ASR L W C TS
Sbjct: 476 VPYCDYEASRPLGW-CNHTS 494
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,117,713
Number of Sequences: 27780
Number of extensions: 232677
Number of successful extensions: 950
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 865
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 948
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1279376318
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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