Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_C08
         (599 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    26   0.25 
AF134817-1|AAD40233.1|  105|Apis mellifera FABP-like protein pro...    23   3.0  
AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding pr...    23   3.0  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           22   4.0  

>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 26.2 bits (55), Expect = 0.25
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = +2

Query: 179 PEIKMTEDKEVTVETNGQEENAKTENSEDETELDIAIIRQVEYY 310
           PEI+++++   +V T   +EN KTE   DE        R   YY
Sbjct: 298 PEIEISQN---SVSTGSDKENHKTEEPNDEVATYDNTPRDFPYY 338


>AF134817-1|AAD40233.1|  105|Apis mellifera FABP-like protein
           protein.
          Length = 105

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -2

Query: 160 FNGKYLLISENKFIEASKL 104
           F GK+  +S+N F E +K+
Sbjct: 2   FEGKFQFVSQNNFEEFAKV 20


>AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding
           protein protein.
          Length = 135

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -2

Query: 160 FNGKYLLISENKFIEASKL 104
           F GK+  +S+N F E +K+
Sbjct: 4   FEGKFQFVSQNNFEEFAKV 22


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -2

Query: 103 RYSKVRPDNFKEIAFKVEKHVF 38
           RY  +  D FK+ +F+++ H F
Sbjct: 332 RYGLLIYDFFKDSSFRIQHHFF 353


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 143,921
Number of Sequences: 438
Number of extensions: 2774
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17604432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)