Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP03_F_C07
(619 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po... 43 4e-05
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 29 0.54
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 27 1.6
SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces ... 26 3.8
SPAC2F7.06c |pol4||DNA polymerase X family|Schizosaccharomyces p... 26 3.8
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p... 26 5.0
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 26 5.0
SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein Sap155|Sc... 25 6.6
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 25 6.6
>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 42.7 bits (96), Expect = 4e-05
Identities = 21/44 (47%), Positives = 28/44 (63%), Gaps = 2/44 (4%)
Frame = +3
Query: 492 YRVLVTGLPPSGSWQDLKDHMRXAGDVCFAXTFKD--GSGVVEF 617
+R++V L SWQDLKD MR AG+ F ++ G+GVVEF
Sbjct: 98 FRLIVENLSEDVSWQDLKDVMRKAGEPTFTDAHRENPGAGVVEF 141
Score = 27.5 bits (58), Expect = 1.6
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = +2
Query: 167 NECRIYVGNLPPDIRTKDIQDLF 235
+E R++VG +PP +D+ D F
Sbjct: 2 SETRLFVGRIPPQATREDMMDFF 24
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 29.1 bits (62), Expect = 0.54
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +2
Query: 155 SXNRNECRIYVGNLPPDIRTKDIQDLF 235
S + E IYVGNLP ++ D+ +LF
Sbjct: 14 STKKCEISIYVGNLPSTCQSSDLHELF 40
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 27.5 bits (58), Expect = 1.6
Identities = 13/22 (59%), Positives = 14/22 (63%)
Frame = +3
Query: 507 TGLPPSGSWQDLKDHMRXAGDV 572
T LP + WQDLKD R AG V
Sbjct: 188 TLLPYNVRWQDLKDLFRQAGSV 209
Score = 26.6 bits (56), Expect = 2.9
Identities = 11/37 (29%), Positives = 19/37 (51%)
Frame = +2
Query: 134 PIMSGGSSXNRNECRIYVGNLPPDIRTKDIQDLFYNV 244
P + G + E R+YVGNL +R ++++ V
Sbjct: 53 PHLGNGQKYTQQERRVYVGNLSYQVRWFELKEFMGQV 89
>SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 561
Score = 26.2 bits (55), Expect = 3.8
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +2
Query: 179 IYVGNLPPDIRTKDIQDLF 235
IYVGNLPP ++++ LF
Sbjct: 428 IYVGNLPPSTSEEELKVLF 446
>SPAC2F7.06c |pol4||DNA polymerase X family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 506
Score = 26.2 bits (55), Expect = 3.8
Identities = 12/49 (24%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Frame = -3
Query: 308 KFHEREWRTFSVL*VNERYFSERCKTSLEYPLSLCPVVSFQ---HIYDT 171
+++++ WRT + ++ F+++ K LE+ C V+ + IY+T
Sbjct: 279 EWYQKGWRTIEQVRKHKDSFTKQIKVGLEFYEDFCKTVTIEEATEIYET 327
>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 275
Score = 25.8 bits (54), Expect = 5.0
Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 3/30 (10%)
Frame = +3
Query: 234 FTTFGKVTFVDL---KNRKGPPFAFVEFED 314
F FG + D+ + R PFAFVE+ED
Sbjct: 27 FEPFGPLIRCDIPIPRTRTSRPFAFVEYED 56
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 25.8 bits (54), Expect = 5.0
Identities = 8/21 (38%), Positives = 15/21 (71%)
Frame = +2
Query: 173 CRIYVGNLPPDIRTKDIQDLF 235
C +YVGN+P ++ + + D+F
Sbjct: 5 CVVYVGNIPYEMAEEQVIDIF 25
>SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein
Sap155|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1188
Score = 25.4 bits (53), Expect = 6.6
Identities = 14/30 (46%), Positives = 16/30 (53%)
Frame = +2
Query: 212 TKDIQDLFYNVRKSNVR*PKEQKRSAIRVR 301
T+D DL YN PKE+ SAI VR
Sbjct: 40 TQDSNDLQYNAHLFKSSNPKEEYDSAIDVR 69
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 25.4 bits (53), Expect = 6.6
Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Frame = +2
Query: 176 RIYVGNLPPDIRTKDIQDLF--YNVRKSNVR*PKEQKRSA 289
+I + NLP + KD+Q L Y +S VR PK+ RSA
Sbjct: 722 KILIKNLPFEATKKDVQSLLGAYGQLRS-VRVPKKFDRSA 760
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,076,080
Number of Sequences: 5004
Number of extensions: 32925
Number of successful extensions: 87
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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