Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP03_F_C07
(619 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL132904-14|CAC35847.2| 258|Caenorhabditis elegans Hypothetical... 91 8e-19
AF242767-1|AAG36874.1| 258|Caenorhabditis elegans SF2 protein. 91 8e-19
Z82266-4|CAB05180.1| 227|Caenorhabditis elegans Hypothetical pr... 32 0.29
Z66521-8|CAA91394.1| 281|Caenorhabditis elegans Hypothetical pr... 31 0.66
U23172-15|AAN63408.1| 374|Caenorhabditis elegans Hypothetical p... 31 0.87
U23172-14|AAL02495.1| 165|Caenorhabditis elegans Hypothetical p... 31 0.87
U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical p... 31 0.87
Z66521-2|CAA91395.1| 312|Caenorhabditis elegans Hypothetical pr... 29 2.0
U29488-13|AAA68780.1| 1599|Caenorhabditis elegans Hypothetical p... 28 6.1
>AL132904-14|CAC35847.2| 258|Caenorhabditis elegans Hypothetical
protein Y111B2A.18 protein.
Length = 258
Score = 90.6 bits (215), Expect = 8e-19
Identities = 51/136 (37%), Positives = 64/136 (47%), Gaps = 8/136 (5%)
Frame = +3
Query: 234 FTTFGKVTFVDLKNRKGPPFAFVEFEDPXXXXXXXXXXXXXXXXXXXLRVEFXXXXXXXX 413
F +G++ +VD+K+ +GP FAFVEFED +RVEF
Sbjct: 29 FHKYGRIKYVDIKSGRGPAFAFVEFEDHRDAEDAVRARDGYEFDGRRIRVEFTRGVGPRG 88
Query: 414 XXXXXXXXXXXXXXXXXXXXXXXXXE--------YRVLVTGLPPSGSWQDLKDHMRXAGD 569
YRV+V GLPP+GSWQDLKDHMR AGD
Sbjct: 89 PGGRPLQDGGDHRGGDFRGGRGGGRGGGPQRRTGYRVIVEGLPPTGSWQDLKDHMRDAGD 148
Query: 570 VCFAXTFKDGSGVVEF 617
VC+A +DG+GVVEF
Sbjct: 149 VCYADVARDGTGVVEF 164
Score = 35.5 bits (78), Expect = 0.031
Identities = 11/21 (52%), Positives = 19/21 (90%)
Frame = +2
Query: 176 RIYVGNLPPDIRTKDIQDLFY 238
++YVGNLP D+R K+++D+F+
Sbjct: 10 KVYVGNLPGDVREKEVEDIFH 30
>AF242767-1|AAG36874.1| 258|Caenorhabditis elegans SF2 protein.
Length = 258
Score = 90.6 bits (215), Expect = 8e-19
Identities = 51/136 (37%), Positives = 64/136 (47%), Gaps = 8/136 (5%)
Frame = +3
Query: 234 FTTFGKVTFVDLKNRKGPPFAFVEFEDPXXXXXXXXXXXXXXXXXXXLRVEFXXXXXXXX 413
F +G++ +VD+K+ +GP FAFVEFED +RVEF
Sbjct: 29 FHKYGRIKYVDIKSGRGPAFAFVEFEDHRDAEDAVRARDGYEFDGRRIRVEFTRGVGPRG 88
Query: 414 XXXXXXXXXXXXXXXXXXXXXXXXXE--------YRVLVTGLPPSGSWQDLKDHMRXAGD 569
YRV+V GLPP+GSWQDLKDHMR AGD
Sbjct: 89 PSGRPLQDGGDHRGGDFRGGRGGGRGGGPQRRTGYRVIVEGLPPTGSWQDLKDHMRDAGD 148
Query: 570 VCFAXTFKDGSGVVEF 617
VC+A +DG+GVVEF
Sbjct: 149 VCYADVARDGTGVVEF 164
Score = 35.5 bits (78), Expect = 0.031
Identities = 11/21 (52%), Positives = 19/21 (90%)
Frame = +2
Query: 176 RIYVGNLPPDIRTKDIQDLFY 238
++YVGNLP D+R K+++D+F+
Sbjct: 10 KVYVGNLPGDVREKEVEDIFH 30
>Z82266-4|CAB05180.1| 227|Caenorhabditis elegans Hypothetical
protein F23B2.6 protein.
Length = 227
Score = 32.3 bits (70), Expect = 0.29
Identities = 15/41 (36%), Positives = 26/41 (63%), Gaps = 2/41 (4%)
Frame = +2
Query: 143 SGGSSXNRNECRIYVGNLPPDIRTKDIQDLF--YNVRKSNV 259
+GGSS + + RI + NL + + D+Q+LF +N+ K +V
Sbjct: 70 AGGSSNDNKQVRINISNLAETVISSDLQELFGAFNLHKVSV 110
>Z66521-8|CAA91394.1| 281|Caenorhabditis elegans Hypothetical
protein W02B12.2 protein.
Length = 281
Score = 31.1 bits (67), Expect = 0.66
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +3
Query: 492 YRVLVTGLPPSGSWQDLKDHMRXAG 566
+R+++ L SWQD+KDH+R G
Sbjct: 112 FRLVIDNLSTRYSWQDIKDHIRKLG 136
>U23172-15|AAN63408.1| 374|Caenorhabditis elegans Hypothetical
protein F25B5.7d protein.
Length = 374
Score = 30.7 bits (66), Expect = 0.87
Identities = 9/21 (42%), Positives = 18/21 (85%)
Frame = +2
Query: 173 CRIYVGNLPPDIRTKDIQDLF 235
CR++VGNLP +++ ++++LF
Sbjct: 116 CRLFVGNLPNEVKETELKELF 136
>U23172-14|AAL02495.1| 165|Caenorhabditis elegans Hypothetical
protein F25B5.7b protein.
Length = 165
Score = 30.7 bits (66), Expect = 0.87
Identities = 9/21 (42%), Positives = 18/21 (85%)
Frame = +2
Query: 173 CRIYVGNLPPDIRTKDIQDLF 235
CR++VGNLP +++ ++++LF
Sbjct: 116 CRLFVGNLPNEVKETELKELF 136
>U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical
protein F25B5.7a protein.
Length = 562
Score = 30.7 bits (66), Expect = 0.87
Identities = 9/21 (42%), Positives = 18/21 (85%)
Frame = +2
Query: 173 CRIYVGNLPPDIRTKDIQDLF 235
CR++VGNLP +++ ++++LF
Sbjct: 116 CRLFVGNLPNEVKETELKELF 136
>Z66521-2|CAA91395.1| 312|Caenorhabditis elegans Hypothetical
protein W02B12.3a protein.
Length = 312
Score = 29.5 bits (63), Expect = 2.0
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +3
Query: 492 YRVLVTGLPPSGSWQDLKDHMRXAG 566
+RV+V L SWQDLKD +R G
Sbjct: 129 HRVVVENLSSRISWQDLKDQVRRQG 153
>U29488-13|AAA68780.1| 1599|Caenorhabditis elegans Hypothetical
protein C56C10.12 protein.
Length = 1599
Score = 27.9 bits (59), Expect = 6.1
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = -3
Query: 248 SERCKTSLEYPLSLCPVVSFQHIYDTHFC 162
SE C++ EY L +S IYDT C
Sbjct: 660 SEECRSRCEYALRSNKKMSIHEIYDTPIC 688
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,521,385
Number of Sequences: 27780
Number of extensions: 185307
Number of successful extensions: 410
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 390
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 410
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1342816466
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -