Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_C05
         (650 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic acetyl...    25   0.54 
EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic acetyl...    25   0.54 
EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic acetyl...    25   0.54 
EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic acetyl...    25   0.54 
EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic acetyl...    25   0.54 
AM292376-1|CAL23188.2|  402|Tribolium castaneum gustatory recept...    23   1.6  
AM292332-1|CAL23144.2|  344|Tribolium castaneum gustatory recept...    23   1.6  
AM292381-1|CAL23193.2|  364|Tribolium castaneum gustatory recept...    21   6.7  

>EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           5 protein.
          Length = 311

 Score = 25.0 bits (52), Expect = 0.54
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +2

Query: 296 KPFSNEGKPLVVQFTVKHEQXID 364
           +P +NE +PL V+F +  +Q ID
Sbjct: 20  RPVANESEPLEVKFGLTLQQIID 42


>EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           4 protein.
          Length = 311

 Score = 25.0 bits (52), Expect = 0.54
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +2

Query: 296 KPFSNEGKPLVVQFTVKHEQXID 364
           +P +NE +PL V+F +  +Q ID
Sbjct: 20  RPVANESEPLEVKFGLTLQQIID 42


>EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           3 protein.
          Length = 311

 Score = 25.0 bits (52), Expect = 0.54
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +2

Query: 296 KPFSNEGKPLVVQFTVKHEQXID 364
           +P +NE +PL V+F +  +Q ID
Sbjct: 20  RPVANESEPLEVKFGLTLQQIID 42


>EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           2 protein.
          Length = 311

 Score = 25.0 bits (52), Expect = 0.54
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +2

Query: 296 KPFSNEGKPLVVQFTVKHEQXID 364
           +P +NE +PL V+F +  +Q ID
Sbjct: 20  RPVANESEPLEVKFGLTLQQIID 42


>EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           1 protein.
          Length = 311

 Score = 25.0 bits (52), Expect = 0.54
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +2

Query: 296 KPFSNEGKPLVVQFTVKHEQXID 364
           +P +NE +PL V+F +  +Q ID
Sbjct: 20  RPVANESEPLEVKFGLTLQQIID 42


>AM292376-1|CAL23188.2|  402|Tribolium castaneum gustatory receptor
           candidate 55 protein.
          Length = 402

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 13/34 (38%), Positives = 15/34 (44%)
 Frame = +2

Query: 188 FGKFKLTAGKFFSDPEDDKGLKTSEDARFYALSR 289
           FGK   T   FFSD + D  +    D   Y L R
Sbjct: 203 FGKINRTMRSFFSDNKQDDKIPQISD-NLYILCR 235


>AM292332-1|CAL23144.2|  344|Tribolium castaneum gustatory receptor
           candidate 11 protein.
          Length = 344

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 13/34 (38%), Positives = 15/34 (44%)
 Frame = +2

Query: 188 FGKFKLTAGKFFSDPEDDKGLKTSEDARFYALSR 289
           FGK   T   FFSD + D  +    D   Y L R
Sbjct: 203 FGKINRTMRSFFSDNKQDDKIPQISD-NLYILCR 235


>AM292381-1|CAL23193.2|  364|Tribolium castaneum gustatory receptor
           candidate 60 protein.
          Length = 364

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 10/33 (30%), Positives = 15/33 (45%)
 Frame = -1

Query: 239 HPLGR*RTFQQSI*TFQILFLGAHCTPNCFPTN 141
           +P+G       S+  F ++FL   CT  C   N
Sbjct: 133 YPVGIVGVKNASLFIFDLIFLSFRCTKLCKEAN 165


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,355
Number of Sequences: 336
Number of extensions: 3447
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16760905
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)