Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP03_F_C05
(650 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces pombe... 86 5e-18
SPBP4H10.19c |||calreticulin/calnexin homolog|Schizosaccharomyce... 42 1e-04
SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 28 1.3
SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor Thi1|Sc... 26 4.1
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc... 26 4.1
SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces p... 26 5.4
SPBC215.15 |sec13||COPII-coated vesicle component Sec13|Schizosa... 26 5.4
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ... 25 7.2
SPAC20G8.02 |||phospholipase|Schizosaccharomyces pombe|chr 1|||M... 25 9.5
>SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 560
Score = 85.8 bits (203), Expect = 5e-18
Identities = 53/145 (36%), Positives = 75/145 (51%), Gaps = 8/145 (5%)
Frame = +2
Query: 239 DKGLKTSEDARFYALSRKF-KPFSNEGKPLVVQFTVKHEQXIDCGGGYLXVFDCKLEXKD 415
+ GL ++A +A+S +F +P + K LVVQ+ V E+ ++CGG YL + + +
Sbjct: 89 EAGLVMKDEAAHHAISYEFDEPINEPEKDLVVQYEVNPEEGLNCGGAYLKLL-AEPTHGE 147
Query: 416 MHGETPYEIMFGPDICGPGTKKVHVIFSYXG-------KNHLIKKDIRCKDDVYTHLYTL 574
M Y IMFGPD CG + VH IF + + HL + T+LYTL
Sbjct: 148 MSNSIDYRIMFGPDKCGVNDR-VHFIFKHKNPLTGEYSEKHLDSRPASLLKPGITNLYTL 206
Query: 575 IVKPDNTYEVLIDNXKVESGDLQAD 649
IVKPD T+EV I+ V G L D
Sbjct: 207 IVKPDQTFEVRINGDVVRQGSLFYD 231
>SPBP4H10.19c |||calreticulin/calnexin homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 381
Score = 41.5 bits (93), Expect = 1e-04
Identities = 49/182 (26%), Positives = 77/182 (42%), Gaps = 8/182 (4%)
Frame = +2
Query: 119 FEEKFPDD---SWESNWVYSEHPGKEFGKFKLTAGKFFSDPEDDKGLKTSEDARFYAL-S 286
F E+F + +W S W K+ G + L S D+ GL T + + + L S
Sbjct: 33 FSEQFTSEDITTWRSRW--RAPVNKDLGVWDLVEAPG-SHLRDEYGLITLKSNKPHILIS 89
Query: 287 RKFKPFSNEGK--PLVVQFTVKHEQXIDCGGGYLXVFDCKLEXKDMHGETPYEIMFGPDI 460
P + + P+V+ F VK + CG Y+ + + K++ E P I FG
Sbjct: 90 NLENPTTRQSSSVPIVLSFQVKPTKPWTCGHAYVSLVH-QSNPKNVSKEPPSVIRFGVKK 148
Query: 461 CGPGTKKVHVIFSYXGK--NHLIKKDIRCKDDVYTHLYTLIVKPDNTYEVLIDNXKVESG 634
CG I SY GK HL + T +YTL+++ + T + D V +G
Sbjct: 149 CGMFDYISLSIISYDGKVSCHLYDAPPSGLVEGRTSMYTLLLQ-NTTVVIRRDQSVVYTG 207
Query: 635 DL 640
D+
Sbjct: 208 DV 209
>SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 821
Score = 27.9 bits (59), Expect = 1.3
Identities = 15/44 (34%), Positives = 19/44 (43%)
Frame = -3
Query: 204 NLNFPNSFPGCSLYTQLLSHESSGNFSSKXTXQFXEDNASKLTT 73
N N F + + S +SGNFS T Q DN S +T
Sbjct: 575 NSNSQRPFSTVPSESNVFSRNASGNFSMSQTHQPTTDNTSSFST 618
>SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor
Thi1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 775
Score = 26.2 bits (55), Expect = 4.1
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = -3
Query: 273 NLASSEVFKPLSSSGSLKNFPAVNLNFPNSFP 178
N +E F+P + SL N P +N ++ ++ P
Sbjct: 685 NSTPNEAFQPFDQTSSLYNVPGLNKSYVSNQP 716
>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1190
Score = 26.2 bits (55), Expect = 4.1
Identities = 12/48 (25%), Positives = 24/48 (50%)
Frame = +2
Query: 125 EKFPDDSWESNWVYSEHPGKEFGKFKLTAGKFFSDPEDDKGLKTSEDA 268
+ F +D + +W EH K ++ + + FS+ DD+ + SE +
Sbjct: 49 QAFQEDEGDEDWEEEEHKPKAKRRYNTRSNESFSE-GDDEPFEVSESS 95
>SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1040
Score = 25.8 bits (54), Expect = 5.4
Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Frame = -3
Query: 297 LNLRERA*NLASSEV----FKPLSSSGSLKNFPAVNLNFPNSFPGCSLYTQLLSHESS 136
++LR RA L+ E+ + LS+ LK +++ FP SFP +Y + ++SS
Sbjct: 121 VDLRMRAIFLSIDEISMICIRILSAEERLKTGRSIDSGFPFSFPVHLIYDMCILNDSS 178
>SPBC215.15 |sec13||COPII-coated vesicle component
Sec13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 297
Score = 25.8 bits (54), Expect = 5.4
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +2
Query: 122 EEKFPDDSWESNWVYS 169
EEKFPD +W +W S
Sbjct: 251 EEKFPDIAWRVSWSLS 266
>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1364
Score = 25.4 bits (53), Expect = 7.2
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = +2
Query: 209 AGKFFSDPEDDKGLKTSEDARFYALSRKFKPFSNE 313
A F S E KGL +SE Y+L P SN+
Sbjct: 263 ADSFLSHSESIKGLSSSEQGTVYSLKASHDP-SNQ 296
>SPAC20G8.02 |||phospholipase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 757
Score = 25.0 bits (52), Expect = 9.5
Identities = 14/47 (29%), Positives = 20/47 (42%)
Frame = +2
Query: 194 KFKLTAGKFFSDPEDDKGLKTSEDARFYALSRKFKPFSNEGKPLVVQ 334
K LT +S+ D G+ FY + P S +PLVV+
Sbjct: 578 KTNLTRSLSYSEQSFDSGVSILSCQNFYNIFHPTDPISYRVEPLVVK 624
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,618,440
Number of Sequences: 5004
Number of extensions: 53059
Number of successful extensions: 164
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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