Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_C05
         (650 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X59589-1|CAA42159.1|  395|Caenorhabditis elegans calreticulin pr...   231   4e-61
AF125963-7|AAD14746.1|  395|Caenorhabditis elegans Calreticulin ...   231   4e-61
Z22181-5|CAA80183.1|  619|Caenorhabditis elegans Hypothetical pr...    89   2e-18
U58751-10|AAB00661.1|  205|Caenorhabditis elegans Hypothetical p...    28   5.0  
U23522-2|AAC46818.1|  521|Caenorhabditis elegans Hypothetical pr...    28   5.0  
Z77132-5|CAB00863.2| 1423|Caenorhabditis elegans Hypothetical pr...    28   6.6  
U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical p...    28   6.6  
AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin p...    28   6.6  

>X59589-1|CAA42159.1|  395|Caenorhabditis elegans calreticulin
           protein.
          Length = 395

 Score =  231 bits (564), Expect = 4e-61
 Identities = 105/180 (58%), Positives = 133/180 (73%), Gaps = 1/180 (0%)
 Frame = +2

Query: 113 VFFEEKFPDDSWESNWVYSEHPGKEFGKFKLTAGKFFSDPEDDKGLKTSEDARFYALSRK 292
           V+F+E+F D SWE  WV S+H   +FG FKL+AGKFF     D+G++TS+DA+FY+ + K
Sbjct: 17  VYFKEEFNDASWEKRWVQSKHKD-DFGAFKLSAGKFFDVESRDQGIQTSQDAKFYSRAAK 75

Query: 293 F-KPFSNEGKPLVVQFTVKHEQXIDCGGGYLXVFDCKLEXKDMHGETPYEIMFGPDICGP 469
           F K FSN+GK LV+Q+TVKHEQ IDCGGGY+ V     +  D HGETPY +MFGPDICGP
Sbjct: 76  FDKDFSNKGKTLVIQYTVKHEQGIDCGGGYVKVMRADADLGDFHGETPYNVMFGPDICGP 135

Query: 470 GTKKVHVIFSYXGKNHLIKKDIRCKDDVYTHLYTLIVKPDNTYEVLIDNXKVESGDLQAD 649
            T++VHVI +Y G+N LIKK+I CK D  THLYTLI+  DNTYEV ID    ++G L+ D
Sbjct: 136 -TRRVHVILNYKGENKLIKKEITCKSDELTHLYTLILNSDNTYEVKIDGESAQTGSLEED 194


>AF125963-7|AAD14746.1|  395|Caenorhabditis elegans Calreticulin
           protein 1 protein.
          Length = 395

 Score =  231 bits (564), Expect = 4e-61
 Identities = 105/180 (58%), Positives = 133/180 (73%), Gaps = 1/180 (0%)
 Frame = +2

Query: 113 VFFEEKFPDDSWESNWVYSEHPGKEFGKFKLTAGKFFSDPEDDKGLKTSEDARFYALSRK 292
           V+F+E+F D SWE  WV S+H   +FG FKL+AGKFF     D+G++TS+DA+FY+ + K
Sbjct: 17  VYFKEEFNDASWEKRWVQSKHKD-DFGAFKLSAGKFFDVESRDQGIQTSQDAKFYSRAAK 75

Query: 293 F-KPFSNEGKPLVVQFTVKHEQXIDCGGGYLXVFDCKLEXKDMHGETPYEIMFGPDICGP 469
           F K FSN+GK LV+Q+TVKHEQ IDCGGGY+ V     +  D HGETPY +MFGPDICGP
Sbjct: 76  FDKDFSNKGKTLVIQYTVKHEQGIDCGGGYVKVMRADADLGDFHGETPYNVMFGPDICGP 135

Query: 470 GTKKVHVIFSYXGKNHLIKKDIRCKDDVYTHLYTLIVKPDNTYEVLIDNXKVESGDLQAD 649
            T++VHVI +Y G+N LIKK+I CK D  THLYTLI+  DNTYEV ID    ++G L+ D
Sbjct: 136 -TRRVHVILNYKGENKLIKKEITCKSDELTHLYTLILNSDNTYEVKIDGESAQTGSLEED 194


>Z22181-5|CAA80183.1|  619|Caenorhabditis elegans Hypothetical
           protein ZK632.6 protein.
          Length = 619

 Score = 89.4 bits (212), Expect = 2e-18
 Identities = 53/152 (34%), Positives = 77/152 (50%), Gaps = 13/152 (8%)
 Frame = +2

Query: 233 EDDKGLKTSEDARFYALSRKFK-PFSNEGKPLVVQFTVKHEQXIDCGGGYLXVFD--CKL 403
           E D GL     AR +A++ K   PF+ +    VVQ+ +K E+  +CGGGYL +     + 
Sbjct: 107 EGDLGLIVKTKARHHAIAAKLNTPFAFDANTFVVQYDIKFEEGQECGGGYLKLLSEGAEK 166

Query: 404 EXKDMHGETPYEIMFGPDICGPGTKKVHVIFSYXGKNHLIKKDIRCK----------DDV 553
           +  +   +T Y IMFGPD CG  T KVH+IF Y    +    +              DD 
Sbjct: 167 DLANFQDKTAYTIMFGPDKCG-ATGKVHLIFRYKNPINGTISEYHANQPTTIGSTYWDDH 225

Query: 554 YTHLYTLIVKPDNTYEVLIDNXKVESGDLQAD 649
            THL+TL+VKP   Y V +D   +  G++ +D
Sbjct: 226 NTHLFTLVVKPTGEYSVSVDGKSLYYGNMMSD 257


>U58751-10|AAB00661.1|  205|Caenorhabditis elegans Hypothetical
           protein C07G1.7 protein.
          Length = 205

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = -2

Query: 388 DXEVSASTVNVLFMFDSELDYQGFTLITERFELTGESIEPR 266
           D E     + +L   D ++DY+ F  + E+F   G+S+  R
Sbjct: 130 DRETCEENIKILQREDRDVDYREFLTMAEKFNEEGQSLWAR 170


>U23522-2|AAC46818.1|  521|Caenorhabditis elegans Hypothetical
           protein W06B4.2 protein.
          Length = 521

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = -2

Query: 556 VDIIFAADIFFDEMVLTXVTEDYVYLLGSRTTNVRAEHNLIW 431
           +D+I A+D+FFD      + + +  LL      ++ EH  IW
Sbjct: 111 LDVIIASDVFFDPSTFCPLIDTFAQLL------IKFEHATIW 146


>Z77132-5|CAB00863.2| 1423|Caenorhabditis elegans Hypothetical
           protein F54D1.6 protein.
          Length = 1423

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -3

Query: 96  DNASKLTTTXTTACIFDAQDHLMQTKDRP 10
           +N ++  T     C +D Q HLMQT  +P
Sbjct: 727 ENLARFPTHYGQVCCYDDQGHLMQTSYQP 755


>U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical protein
             K07E12.1a protein.
          Length = 13100

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = +2

Query: 509   KNHLIKKDIRCKDDVYTHLYTLIVKPDNTYEV-LIDNXKVES 631
             K   I+K++ C+D   THL  L    D+TY V ++ N +V++
Sbjct: 12856 KEKWIRKEVTCRDSFGTHLNEL--PSDHTYTVCVMTNERVDN 12895


>AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin protein.
          Length = 13100

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = +2

Query: 509   KNHLIKKDIRCKDDVYTHLYTLIVKPDNTYEV-LIDNXKVES 631
             K   I+K++ C+D   THL  L    D+TY V ++ N +V++
Sbjct: 12856 KEKWIRKEVTCRDSFGTHLNEL--PSDHTYTVCVMTNERVDN 12895


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,929,382
Number of Sequences: 27780
Number of extensions: 317103
Number of successful extensions: 795
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 744
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 788
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)