Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_C02
         (655 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F12.02c |p23fy||translationally controlled tumor protein ho...    84   1e-17
SPBC776.10c |cog6||Golgi transport complex peripheral subunit Co...    28   1.0  
SPBC947.11c |elg1||DNA replication factor C complex subunit Elg1...    26   4.1  
SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|c...    26   4.1  
SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyce...    25   7.2  
SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyc...    25   7.2  
SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2 |Schiz...    25   9.5  

>SPAC1F12.02c |p23fy||translationally controlled tumor protein
           homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 168

 Score = 84.2 bits (199), Expect = 1e-17
 Identities = 53/132 (40%), Positives = 71/132 (53%)
 Frame = +3

Query: 204 DIQIEGFNPSAEEADEGTDSAVESGVDIVLNHRLVETYAFGDKKSYTXXXXXXXXXXXXX 383
           D+ I G NPSAE+A+E  +   E+  ++V + RL  T +F DKKSY              
Sbjct: 42  DVDI-GANPSAEDAEENAEEGTETVNNLVYSFRLSPT-SF-DKKSYMSYIKGYMKAIKAR 98

Query: 384 XEXKAPDQVEVFKTNMNKVMKDILGRFKELQFFTGESMDCDGMVAMMEYXXFDGTQIPIM 563
            +   P++V VF+ N    +K IL  FK+  F+ GESMD D MV +M Y   DG   P M
Sbjct: 99  LQESNPERVPVFEKNAIGFVKKILANFKDYDFYIGESMDPDAMVVLMNYRE-DGI-TPYM 156

Query: 564 MFFKHGLQQXKF 599
           +FFK GL   KF
Sbjct: 157 IFFKDGLVSEKF 168



 Score = 35.1 bits (77), Expect = 0.009
 Identities = 14/30 (46%), Positives = 21/30 (70%)
 Frame = +2

Query: 113 DEMFSDTYKMKLVDEVIYEVTGRLVTRAQG 202
           DE+ SD Y +K VD+++YE   ++VT  QG
Sbjct: 11  DELVSDAYDLKEVDDIVYEADCQMVTVKQG 40


>SPBC776.10c |cog6||Golgi transport complex peripheral subunit Cog6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 675

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = -3

Query: 299 VVQDYVNSALDGRVRALVSLFSRRIKTLDLDISPVL 192
           V++D +NS LDG +  +    S R +T  LD+S ++
Sbjct: 341 VLEDQMNSLLDGSLYGICRPLSSRAQTSVLDLSDIV 376


>SPBC947.11c |elg1||DNA replication factor C complex subunit
           Elg1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 920

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +1

Query: 550 KYQS*CFSNMVYNXRNSKCYITNNSIIP 633
           +Y S CF N +++  + K   +N+SI+P
Sbjct: 763 QYHSFCFINNLFSKSSLKAISSNDSIVP 790


>SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1315

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 13/35 (37%), Positives = 15/35 (42%)
 Frame = -1

Query: 211 WISALCSRHQPTGHFVNNFIDQFHFVGVREHLISQ 107
           W S  CS+   TG   +NFI  F   G     I Q
Sbjct: 216 WFSRRCSKINITGSVFDNFIPSFFSFGTHGDGIKQ 250


>SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 481

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = -3

Query: 479 ELKFLKPAEDVFHYFVHVCFKYFNLVR 399
           +  FLKP   ++ YF+ +  +Y +L+R
Sbjct: 175 QFDFLKPNNALYPYFMRIVQQYTSLIR 201


>SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 379

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +2

Query: 71  NPSK*RSIRTLSLADEMFSDTYKMKLVDE 157
           NP+  +  + +SLA E+ SD  + KL D+
Sbjct: 38  NPNGEKKFKEISLAYEVLSDPQRRKLYDQ 66


>SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = -2

Query: 216 RSGYQPCALVTNLPVTS*ITSSTNFIL*VSENISSASDNV 97
           RS Y   A  +N P  + +T ST     +S+N SS+S+++
Sbjct: 337 RSAYSTSANYSNTPPRNTVTPSTARSSTLSQNPSSSSNSI 376


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,500,460
Number of Sequences: 5004
Number of extensions: 47380
Number of successful extensions: 110
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)