Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_C02
         (655 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0628 - 25643006-25643123,25643314-25643471,25643559-256436...    73   3e-13
01_05_0142 - 18564697-18564792,18564824-18564928,18565606-185656...    33   0.15 
09_02_0062 - 3742857-3743045,3744641-3744916,3745933-3745992,374...    29   3.2  
02_01_0336 + 2397648-2397812,2398367-2398441,2398860-2398975,239...    28   7.5  
06_01_1128 + 9300144-9300273,9300340-9300472,9300585-9300656,930...    27   9.9  
01_05_0078 + 17931998-17932062,17933320-17933416,17933506-179336...    27   9.9  

>11_06_0628 -
           25643006-25643123,25643314-25643471,25643559-25643687,
           25644378-25644451,25644771-25644798
          Length = 168

 Score = 72.5 bits (170), Expect = 3e-13
 Identities = 51/140 (36%), Positives = 66/140 (47%), Gaps = 2/140 (1%)
 Frame = +3

Query: 183 W*REHRADIQIEGFNPSAEEA--DEGTDSAVESGVDIVLNHRLVETYAFGDKKSYTXXXX 356
           W  +   D+ I G NPSAE    DEG D      VDIV   RL E   F DKK +     
Sbjct: 35  WVVQGAIDVDI-GANPSAEGGGDDEGVDDQAVKVVDIVDTFRLQEQPPF-DKKQFVTFMK 92

Query: 357 XXXXXXXXXXEXKAPDQVEVFKTNMNKVMKDILGRFKELQFFTGESMDCDGMVAMMEYXX 536
                     +    ++ E FK N+    K +LG+ K+LQFF GESM  DG +    Y  
Sbjct: 93  RYIKNLSAKLDA---EKQEEFKKNIEGATKYLLGKLKDLQFFVGESMHDDGGLVFAYYK- 148

Query: 537 FDGTQIPIMMFFKHGLQQXK 596
            DG   P  ++F HGL++ K
Sbjct: 149 -DGATDPTFLYFSHGLKEVK 167


>01_05_0142 -
           18564697-18564792,18564824-18564928,18565606-18565678,
           18566262-18567637
          Length = 549

 Score = 33.5 bits (73), Expect = 0.15
 Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 4/49 (8%)
 Frame = -3

Query: 527 FHHGNHAITIHRLPSKEL----KFLKPAEDVFHYFVHVCFKYFNLVRRL 393
           FHH  H   ++  PSK+L    ++L+     FH F ++C++Y  + R+L
Sbjct: 245 FHHMLHLFQMYLKPSKKLVEGSQYLERGR-YFHSFANICYRYLKIGRKL 292


>09_02_0062 -
           3742857-3743045,3744641-3744916,3745933-3745992,
           3746554-3748102,3748183-3748418
          Length = 769

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = +3

Query: 192 EHRADIQIEGFNPSAEEADEGTDSAVESGVDIVLNHRLVETYAFGDKK 335
           + +  + I   N S EE +E  ++A    VD+ LN   +E   +G+KK
Sbjct: 706 QEKFSVSINYENASLEEVEEA-EAAARYAVDVHLNRPTLELKRYGEKK 752


>02_01_0336 +
           2397648-2397812,2398367-2398441,2398860-2398975,
           2399155-2399269,2399360-2399488,2399809-2399856,
           2400369-2400448,2400628-2400824,2400916-2401202,
           2401281-2401307,2401353-2401538,2401633-2402094,
           2402201-2402350,2402612-2402687,2402851-2402978,
           2403244-2403435,2403559-2403690,2403767-2403889,
           2404128-2404346,2404518-2404679
          Length = 1022

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = -2

Query: 399 APSXPILXXIFSYSL*GTMCRISCHRRRMFRLA 301
           APS  +   + SYSL GT   +   RR +F LA
Sbjct: 687 APSFQVAFSLMSYSLEGTDSLLPSRRRSLFTLA 719


>06_01_1128 +
          9300144-9300273,9300340-9300472,9300585-9300656,
          9300783-9300926,9301453-9301524,9301584-9301677,
          9301782-9301928
          Length = 263

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 11/17 (64%), Positives = 14/17 (82%)
 Frame = +2

Query: 29 EKPFFRFLLFLIASNPS 79
          E PFF FLL L++S+PS
Sbjct: 2  EAPFFFFLLLLVSSSPS 18


>01_05_0078 +
           17931998-17932062,17933320-17933416,17933506-17933601,
           17933957-17933988,17935143-17935595,17935831-17935975,
           17936058-17936159,17937798-17937890,17939448-17939489,
           17940092-17940202,17940446-17940517,17940596-17940714,
           17940981-17941044,17941133-17942782
          Length = 1046

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = -1

Query: 580 PCL-KNIMIGICVPSKXXYSIMATMPSQSIDSPV 482
           PCL K+   GI  P+K    ++ TMPS S  + +
Sbjct: 200 PCLLKDASTGITKPAKEQGKLLVTMPSSSTSTKI 233


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,584,656
Number of Sequences: 37544
Number of extensions: 286797
Number of successful extensions: 591
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 583
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 588
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)