Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP03_F_B22
         (653 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   4.5  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    22   6.0  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       21   7.9  

>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -2

Query: 289 FPEYSITIVGHHDASHRVH*HF*HGLR 209
           F   ++TIV HH AS     H+ + +R
Sbjct: 352 FQMKNVTIVDHHTASESFMKHYENEMR 378


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = -1

Query: 263 WSSRCLP*GPLTFLTW 216
           W +R LP GP   L W
Sbjct: 8   WEARYLPAGPPRLLGW 23


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -1

Query: 614 EQCLRQDLPNDRCTLFQH 561
           EQ +  +LPND  +LF++
Sbjct: 151 EQYIPPELPNDEKSLFEN 168


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,140
Number of Sequences: 438
Number of extensions: 3471
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)