Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP03_F_B21
(654 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0110 - 866728-866952,867035-867193,867315-867448,868225-86... 149 2e-36
03_05_0108 - 20887146-20887370,20887460-20887618,20887930-208880... 148 3e-36
06_03_0711 + 23798998-23799106,23799838-23799957,23800181-238003... 29 4.3
02_01_0754 - 5595813-5595887,5595973-5596071,5596136-5596327,559... 29 4.3
12_01_0564 - 4567650-4568063,4568154-4568624,4568722-4568923,457... 28 5.6
11_03_0171 + 11111534-11113207 27 9.9
03_02_0098 + 5608787-5610812,5610956-5611053 27 9.9
02_04_0147 + 20194244-20195717,20195953-20195969 27 9.9
>06_01_0110 -
866728-866952,867035-867193,867315-867448,868225-868333
Length = 208
Score = 149 bits (361), Expect = 2e-36
Identities = 80/185 (43%), Positives = 115/185 (62%), Gaps = 2/185 (1%)
Frame = +1
Query: 100 KDLLKLAFNQPARRYRRKQNXIXXXXXXXXXXXXXXLRPIVRCPTVRYHTKVRAGRGFTL 279
++ +K FNQPAR+ RR+ LRPIV+C T++Y+ K RAGRGFTL
Sbjct: 18 QNYVKTWFNQPARKQRRRIARQKKAVKIFPRPTSGPLRPIVQCQTLKYNMKSRAGRGFTL 77
Query: 280 REIRAAGLNPVFARTIGIAVDPRRRNKSVESLQINVQRIKEYRARLILFP-KGKKVLKGE 456
E++AAG+ FA TIGI+VD RR+N+S+E LQ NVQR+K Y+A+L++FP + +KV G+
Sbjct: 78 EELKAAGIPKKFAPTIGISVDHRRKNRSLEGLQANVQRLKTYKAKLVIFPRRARKVKAGD 137
Query: 457 ANEXXRKLATQLRGPLMPVQQPAPKSV-ARPITEXEKNFKAYQYLRGARSIAKLVGIRAK 633
+ ATQ++G MP+ + +SV +T+ K FKAY LR R + +G R K
Sbjct: 138 STPEELATATQVQGDYMPITRGEKRSVEVVKVTDDMKAFKAYAKLRVERMNQRHIGARQK 197
Query: 634 RLXDA 648
R +A
Sbjct: 198 RAAEA 202
Score = 27.9 bits (59), Expect = 7.5
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = +2
Query: 47 MGKGNNMIPNGHFHK 91
M K NN+IPNGHF K
Sbjct: 1 MVKHNNVIPNGHFKK 15
>03_05_0108 -
20887146-20887370,20887460-20887618,20887930-20888063,
20888597-20888705
Length = 208
Score = 148 bits (359), Expect = 3e-36
Identities = 80/185 (43%), Positives = 115/185 (62%), Gaps = 2/185 (1%)
Frame = +1
Query: 100 KDLLKLAFNQPARRYRRKQNXIXXXXXXXXXXXXXXLRPIVRCPTVRYHTKVRAGRGFTL 279
++ +K FNQPAR+ RR+ LRPIV+C T++Y+ K RAGRGFTL
Sbjct: 18 QNYVKTWFNQPARKQRRRIARQKKAVKIFPRPTSGPLRPIVQCQTLKYNMKSRAGRGFTL 77
Query: 280 REIRAAGLNPVFARTIGIAVDPRRRNKSVESLQINVQRIKEYRARLILFP-KGKKVLKGE 456
E++AAG+ +A TIGI+VD RR+N+S+E LQ NVQR+K Y+A+L++FP + +KV G+
Sbjct: 78 EELKAAGIPKKYAPTIGISVDHRRKNRSLEGLQANVQRLKTYKAKLVIFPRRARKVKAGD 137
Query: 457 ANEXXRKLATQLRGPLMPVQQPAPKSV-ARPITEXEKNFKAYQYLRGARSIAKLVGIRAK 633
+ ATQ++G MP+ + +SV +T+ K FKAY LR R + VG R K
Sbjct: 138 STAEELATATQVQGDYMPIARGEKRSVEVVKVTDEMKAFKAYAKLRVERMNQRHVGARQK 197
Query: 634 RLXDA 648
R +A
Sbjct: 198 RAAEA 202
Score = 27.9 bits (59), Expect = 7.5
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = +2
Query: 47 MGKGNNMIPNGHFHK 91
M K NN+IPNGHF K
Sbjct: 1 MVKHNNVIPNGHFKK 15
>06_03_0711 +
23798998-23799106,23799838-23799957,23800181-23800317,
23800418-23800579,23800707-23800793,23800872-23800958,
23801317-23801454,23802023-23802214,23802287-23802385,
23802490-23802564
Length = 401
Score = 28.7 bits (61), Expect = 4.3
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = -3
Query: 343 DLQQFQSFGQILGSILRP 290
DL+ QS GQI+G +LRP
Sbjct: 54 DLKSLQSVGQIIGEVLRP 71
>02_01_0754 -
5595813-5595887,5595973-5596071,5596136-5596327,
5596992-5597129,5597415-5597501,5597583-5597669,
5597795-5597956,5598089-5598225,5598483-5598602,
5600668-5600773
Length = 400
Score = 28.7 bits (61), Expect = 4.3
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = -3
Query: 343 DLQQFQSFGQILGSILRP 290
DL+ QS GQI+G +LRP
Sbjct: 53 DLKSLQSVGQIIGEVLRP 70
>12_01_0564 -
4567650-4568063,4568154-4568624,4568722-4568923,
4570395-4571104
Length = 598
Score = 28.3 bits (60), Expect = 5.6
Identities = 18/57 (31%), Positives = 31/57 (54%)
Frame = +2
Query: 125 TSQLDDTAESKIX*RKLRP*LHVLQLGRYVL*CDAQLFGTILKYAPVEDSLFVKLGP 295
T +L + S++ ++L L++ LG + D + L Y PVEDSLF+++ P
Sbjct: 343 TMELHERVYSEMAMKRLLDNLNIKVLGNTTV--DRLPIFSFLIYPPVEDSLFLRVEP 397
>11_03_0171 + 11111534-11113207
Length = 557
Score = 27.5 bits (58), Expect = 9.9
Identities = 24/108 (22%), Positives = 40/108 (37%), Gaps = 3/108 (2%)
Frame = +1
Query: 256 RAGRGFTLREIRAAGLNPVFARTIGIAVDPRRRNKSVESLQINVQRIKE---YRARLILF 426
+ G+G + + G PV R +G R K + + R++ R R +
Sbjct: 436 KGGKGIVYKVVVGNGTTPVAVRRLGGGAAAAERYKEFAAEAGAIGRVRHPNVVRLRAYYW 495
Query: 427 PKGKKVLKGEANEXXRKLATQLRGPLMPVQQPAPKSVARPITEXEKNF 570
+K++ + LAT LRG P P+P + E F
Sbjct: 496 SADEKLVVTDFVNNGN-LATALRGEHTPSPSPSPSQFVNLFGKRETYF 542
>03_02_0098 + 5608787-5610812,5610956-5611053
Length = 707
Score = 27.5 bits (58), Expect = 9.9
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Frame = -2
Query: 533 DLGAGC*TGINGPRSC---VASLRXXSLASPFSTFLPFGNSIR 414
D GAG G++G RSC V ++ ++A+P LP +IR
Sbjct: 79 DAGAGAGAGVDGGRSCGEVVGAVWRAAMAAPDDPELPSLGAIR 121
>02_04_0147 + 20194244-20195717,20195953-20195969
Length = 496
Score = 27.5 bits (58), Expect = 9.9
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = -1
Query: 219 YRT*RPSCRTWSYGLSF 169
Y T RP CR W + LSF
Sbjct: 264 YHTARPGCRYWVFSLSF 280
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,005,257
Number of Sequences: 37544
Number of extensions: 339960
Number of successful extensions: 695
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 673
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 691
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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